LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
PRMT5-AS1
hsa-miR-221-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000609885
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
332-354
0.011
1
7mer
218-240
0.007
1
7mer
312-339
0.007
1
6mer
516-535
0.003
0
LOC101928505
hsa-miR-221-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104668.1
Biotype: lincRNA
Gene id: NR_104668.1 (gene)
Gene Name: LOC101928505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1290-1314
0.012
1
7mer
1307-1330
0.012
2
6mer
146-163
0.004
2
RP11-268G13.1
hsa-miR-221-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569833
Biotype: lincRNA
Gene id: ENSG00000261411
Gene Name: RP11-268G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1282-1305
0.028
2
RP11-250B2.6
hsa-miR-221-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606629
Biotype: lincRNA
Gene id: ENSG00000272129
Gene Name: RP11-250B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1039-1044
0.025
3
6mer
375-402
0.002
1
XLOC_007761
hsa-miR-221-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016392
Biotype: transcript isomorph
Gene id: XLOC_007761
Gene Name: XLOC_007761
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-406
0.028
Not Conserved
FLJ46284
hsa-miR-221-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504861
Biotype: antisense
Gene id: ENSG00000248858
Gene Name: FLJ46284
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3306-3330
0.028
2
XLOC_009038
hsa-miR-221-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019202
Biotype: transcript isomorph
Gene id: XLOC_009038
Gene Name: XLOC_009038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-182
0.022
1
6mer
666-679
0.005
2
RP1-79C4.1
hsa-miR-221-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413005
Biotype: lincRNA
Gene id: ENSG00000235303
Gene Name: RP1-79C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-333
0.015
1
7mer
344-369
0.006
1
7mer
410-431
0.005
0
6mer
821-840
0.002
1
XX-C2158C6.1
hsa-miR-221-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426839
Biotype: lincRNA
Gene id: ENSG00000230423
Gene Name: XX-C2158C6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-259
0.026
1
6mer
257-276
0.002
Not Conserved
XLOC_000523
hsa-miR-221-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001243
Biotype: transcript isomorph
Gene id: XLOC_000523
Gene Name: XLOC_000523
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-570
0.027
0
XLOC_002617
hsa-miR-221-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005992
Biotype: transcript isomorph
Gene id: XLOC_002617
Gene Name: XLOC_002617
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1590-1603
0.023
0
6mer
551-577
0.004
1
LINC01093
hsa-miR-221-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506479
Biotype: lincRNA
Gene id: ENSG00000249173
Gene Name: LINC01093
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-591
0.027
Not Conserved
CTB-92J24.2
hsa-miR-221-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1140-1160
0.016
0
6mer
1125-1142
0.011
0
XLOC_010409
hsa-miR-221-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021809
Biotype: transcript isomorph
Gene id: XLOC_010409
Gene Name: XLOC_010409
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-83
0.027
1
RP11-127B20.2
hsa-miR-221-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610058
Biotype: lincRNA
Gene id: ENSG00000273156
Gene Name: RP11-127B20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-64
0.027
1
CTB-78F1.1
hsa-miR-221-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522956
Biotype: antisense
Gene id: ENSG00000254187
Gene Name: CTB-78F1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-531
0.026
2
6mer
994-1013
0.002
Not Conserved
FAM66C
hsa-miR-221-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420514
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-217
0.027
0
RP11-624D11.2
hsa-miR-221-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527819
Biotype: lincRNA
Gene id: ENSG00000254532
Gene Name: RP11-624D11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-229
0.027
1
RP11-552M11.4
hsa-miR-221-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416099
Biotype: sense_overlapping
Gene id: ENSG00000243960
Gene Name: RP11-552M11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-408
0.027
4
NPHP3-ACAD11
hsa-miR-221-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6840-6864
0.008
7
7mer
4127-4149
0.006
6
8mer
2252-2277
0.005
2
7mer
626-649
0.005
3
6mer
745-763
0.003
0
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