LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-44M6.7
hsa-miR-214-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000485071
Biotype: retained_intron
Gene id: ENSG00000274272
Gene Name: RP11-44M6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-230
0.012
0
8mer
3188-3202
0.011
9
6mer
318-333
0.004
6
7mer
1684-1704
0.004
7
7mer
2762-2771
0.004
0
7mer
906-931
0.004
Not Conserved
6mer
2547-2572
0.003
6
6mer
420-443
0.003
1
6mer
390-410
0.002
4
6mer
753-777
0.001
Not Conserved
6mer
750-776
0.001
1
6mer
2759-2772
0.001
5
6mer
2756-2772
0.001
4
7mer
1668-1690
0.000
0
6mer
2753-2772
0.000
3
AC010096.1
hsa-miR-214-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443897
Biotype: lincRNA
Gene id: ENSG00000234597
Gene Name: AC010096.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1140-1163
0.043
6
7mer
994-1006
0.005
2
6mer
581-603
0.002
1
RP11-406H21.2
hsa-miR-214-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608026
Biotype: lincRNA
Gene id: ENSG00000273153
Gene Name: RP11-406H21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-165
0.050
1
SHANK3
hsa-miR-214-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
816-835
0.009
8
8mer
1012-1037
0.009
4
8mer
4738-4753
0.007
7
7mer
6582-6598
0.006
3
6mer
4460-4486
0.004
8
8mer
6118-6133
0.002
1
7mer
2549-2563
0.002
1
7mer
3372-3391
0.002
3
7mer
4123-4141
0.002
7
6mer
5519-5542
0.002
6
6mer
1411-1429
0.002
3
7mer
899-925
0.002
4
6mer
4013-4032
0.001
1
6mer
3379-3394
0.000
1
CTC-459F4.3
hsa-miR-214-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588636
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-171
0.025
0
6mer
542-554
0.014
0
6mer
196-213
0.010
0
AC007392.3
hsa-miR-214-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412944
Biotype: lincRNA
Gene id: ENSG00000232046
Gene Name: AC007392.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
423-440
0.033
7
6mer
470-486
0.009
6
6mer
423-443
0.007
5
RP11-24M17.4
hsa-miR-214-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569596
Biotype: lincRNA
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-93
0.024
0
6mer
268-285
0.012
1
6mer
97-119
0.011
1
6mer
260-273
0.003
Not Conserved
TSIX
hsa-miR-214-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36946-36961
0.016
1
8mer
10980-10998
0.005
0
9mer
27583-27590
0.004
0
6mer
873-896
0.004
Not Conserved
7mer
21677-21698
0.003
1
6mer
23514-23530
0.003
2
7mer
29954-29975
0.002
1
6mer
26516-26540
0.002
2
6mer
27975-27987
0.002
0
6mer
16074-16101
0.002
Not Conserved
6mer
8779-8792
0.002
1
6mer
26706-26729
0.002
0
6mer
4364-4379
0.001
1
7mer
14201-14213
0.001
Not Conserved
6mer
23702-23714
0.001
1
6mer
23642-23661
0.001
1
LINC00176
hsa-miR-214-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431158
Biotype: lincRNA
Gene id: ENSG00000196421
Gene Name: LINC00176
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2648-2665
0.018
10
8mer
2147-2165
0.009
1
7mer
2615-2636
0.006
3
7mer
66-87
0.006
2
8mer
524-536
0.004
1
7mer
2187-2210
0.004
6
7mer
1237-1251
0.003
1
6mer
2202-2219
0.001
4
XLOC_002948
hsa-miR-214-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007049
Biotype: transcript isomorph
Gene id: XLOC_002948
Gene Name: XLOC_002948
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-301
0.033
7
6mer
283-304
0.010
6
6mer
676-699
0.004
5
7mer
718-727
0.003
3
XLOC_000022
hsa-miR-214-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000807
Biotype: transcript isomorph
Gene id: XLOC_000022
Gene Name: XLOC_000022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-177
0.009
0
7mer
2966-2984
0.006
1
7mer
1254-1274
0.005
1
7mer
1546-1564
0.005
1
6mer
375-396
0.004
Not Conserved
6mer
3742-3769
0.004
1
7mer
722-742
0.003
1
6mer
3161-3187
0.003
1
8mer+wobble
438-457
0.003
0
7mer
3231-3243
0.002
0
6mer
516-540
0.002
0
6mer
438-463
0.002
0
6mer
989-1014
0.002
0
6mer
867-882
0.001
0
RP11-351J23.2
hsa-miR-214-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000609107
Biotype: lincRNA
Gene id: ENSG00000272549
Gene Name: RP11-351J23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-79
0.031
1
8mer
574-596
0.004
0
6mer
4116-4135
0.003
0
6mer
4325-4343
0.003
0
6mer
494-514
0.002
0
6mer
4322-4343
0.002
0
6mer
2316-2333
0.001
0
6mer
4111-4135
0.001
0
6mer
3439-3459
0.001
Not Conserved
6mer
3269-3286
0.001
0
RP11-114G22.1
hsa-miR-214-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000593117
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
609-625
0.041
4
6mer
702-717
0.008
4
AC144568.2
hsa-miR-214-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522481
Biotype: lincRNA
Gene id: ENSG00000253896
Gene Name: AC144568.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-503
0.039
1
7mer
510-530
0.010
0
AC009299.2
hsa-miR-214-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435692
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-344
0.026
12
6mer
81-91
0.018
12
6mer
493-519
0.005
5
CTD-3193K9.3
hsa-miR-214-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592440
Biotype: antisense
Gene id: ENSG00000267765
Gene Name: CTD-3193K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-557
0.049
9
CTD-2595P9.4
hsa-miR-214-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000615979
Biotype: sense_intronic
Gene id: ENSG00000275155
Gene Name: CTD-2595P9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-75
0.049
9
RP11-131K5.2
hsa-miR-214-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1366-1380
0.027
1
6mer
1863-1885
0.015
1
6mer
514-528
0.007
0
RP11-322D14.2
hsa-miR-214-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562970
Biotype: antisense
Gene id: ENSG00000260145
Gene Name: RP11-322D14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-99
0.037
0
7mer
535-551
0.009
1
6mer
253-279
0.003
1
XLOC_007668
hsa-miR-214-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015561
Biotype: transcript isomorph
Gene id: XLOC_007668
Gene Name: XLOC_007668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
749-768
0.019
0
6mer
108-117
0.016
2
6mer
206-231
0.007
0
7mer
155-173
0.007
0
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