LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
LINC00839
hsa-miR-214-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2033-2055
0.035
1
6mer
2150-2169
0.019
1
XLOC_011038
hsa-miR-214-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022755
Biotype: transcript isomorph
Gene id: XLOC_011038
Gene Name: XLOC_011038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-299
0.054
11
RP11-483F11.7
hsa-miR-214-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452391
Biotype: antisense
Gene id: ENSG00000229278
Gene Name: RP11-483F11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-199
0.054
1
XLOC_001508
hsa-miR-214-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003719
Biotype: transcript isomorph
Gene id: XLOC_001508
Gene Name: XLOC_001508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3521-3538
0.028
7
6mer
2831-2851
0.008
11
6mer
3568-3584
0.006
6
6mer
841-845
0.006
10
6mer
3521-3541
0.006
5
ZNF561-AS1
hsa-miR-214-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1491-1505
0.029
0
6mer
247-272
0.015
0
6mer
1004-1022
0.010
0
DGCR5
hsa-miR-214-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_045121.1
Biotype: lincRNA
Gene id: NR_045121.1 (gene)
Gene Name: DGCR5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2792-2810
0.024
0
8mer
2148-2170
0.009
0
7mer
454-480
0.007
0
8mer
2683-2707
0.006
Not Conserved
6mer
1803-1823
0.002
0
6mer
1067-1091
0.002
0
6mer
1142-1165
0.001
0
6mer
1612-1629
0.001
0
6mer
1493-1516
0.001
0
6mer
1625-1650
0.000
0
XLOC_005238
hsa-miR-214-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012453
Biotype: transcript isomorph
Gene id: XLOC_005238
Gene Name: XLOC_005238
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-196
0.026
2
7mer
262-276
0.014
2
7mer
602-623
0.014
1
SHANK3
hsa-miR-214-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445220
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4532-4547
0.014
7
8mer
785-810
0.011
4
7mer
589-608
0.011
8
6mer
4254-4280
0.005
8
7mer
3917-3935
0.003
7
7mer
3166-3185
0.002
3
7mer
2343-2357
0.002
1
7mer
672-698
0.002
4
6mer
1184-1202
0.002
3
6mer
3807-3826
0.001
1
6mer
3173-3188
0.000
1
RP11-883G14.1
hsa-miR-214-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567534
Biotype: lincRNA
Gene id: ENSG00000261241
Gene Name: RP11-883G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
829-842
0.019
1
7mer
77-100
0.010
1
8mer
489-513
0.010
1
8mer
780-800
0.008
Not Conserved
6mer
746-772
0.004
2
6mer
504-516
0.002
3
XLOC_013424
hsa-miR-214-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027818
Biotype: transcript isomorph
Gene id: XLOC_013424
Gene Name: XLOC_013424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-288
0.027
0
7mer
61-80
0.025
0
6mer
39-64
0.002
Not Conserved
CTD-3074O7.12
hsa-miR-214-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602427
Biotype: lincRNA
Gene id: ENSG00000269990
Gene Name: CTD-3074O7.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-282
0.030
2
7mer
41-66
0.010
1
7mer
880-893
0.006
0
6mer
1250-1272
0.004
3
6mer
450-466
0.002
0
RP11-175O19.4
hsa-miR-214-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2337-2361
0.020
7
6mer
3028-3051
0.014
9
6mer
2780-2804
0.007
7
6mer
1082-1090
0.005
4
6mer
2649-2675
0.005
6
6mer
1510-1533
0.002
5
6mer
2398-2424
0.001
0
LOC100506188
hsa-miR-214-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_109774.1
Biotype: lincRNA
Gene id: NR_109774.1 (gene)
Gene Name: LOC100506188
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-364
0.027
3
7mer
1186-1212
0.009
1
7mer
321-343
0.008
1
6mer
1345-1363
0.003
0
7mer
487-505
0.003
0
6mer
1183-1198
0.002
0
RP11-529E10.6
hsa-miR-214-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564650
Biotype: sense_overlapping
Gene id: ENSG00000261643
Gene Name: RP11-529E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-158
0.029
0
7mer
406-429
0.023
0
ERVH48-1
hsa-miR-214-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2097-2118
0.042
0
6mer
733-745
0.010
0
DGCR5
hsa-miR-214-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_002733.2
Biotype: lincRNA
Gene id: NR_002733.2 (gene)
Gene Name: DGCR5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2936-2954
0.024
0
8mer
2292-2314
0.009
0
8mer
2827-2851
0.006
Not Conserved
7mer
598-624
0.006
0
6mer
1947-1967
0.002
0
6mer
1211-1235
0.002
0
6mer
1756-1773
0.001
0
6mer
1286-1309
0.001
0
6mer
1637-1660
0.001
0
6mer
1769-1794
0.000
0
RP11-574K11.29
hsa-miR-214-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000415917
Biotype: lincRNA
Gene id: ENSG00000272140
Gene Name: RP11-574K11.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-209
0.017
1
6mer
375-398
0.014
1
6mer
197-209
0.012
1
7mer
814-836
0.010
0
AF131217.1
hsa-miR-214-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433310
Biotype: lincRNA
Gene id: ENSG00000232855
Gene Name: AF131217.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-407
0.027
1
8mer
686-710
0.019
1
6mer
752-776
0.006
5
XLOC_009195
hsa-miR-214-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019371
Biotype: transcript isomorph
Gene id: XLOC_009195
Gene Name: XLOC_009195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-232
0.028
1
8mer
102-121
0.014
1
7mer
238-255
0.006
1
7mer
185-209
0.004
Not Conserved
C1RL-AS1
hsa-miR-214-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541775
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5048-5067
0.022
2
7mer
404-426
0.005
0
6mer
76-95
0.005
3
7mer
2427-2452
0.003
1
7mer
1816-1839
0.003
0
6mer
420-433
0.002
1
6mer
420-436
0.002
1
6mer
421-442
0.002
1
6mer
420-439
0.002
1
6mer
423-445
0.002
1
6mer
423-448
0.001
0
7mer
1837-1863
0.001
Not Conserved
6mer
2537-2563
0.001
1
6mer
2581-2600
0.001
0
6mer
2472-2487
0.000
0
6mer
2481-2506
0.000
1
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