LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010584
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021981
Biotype: transcript isomorph
Gene id: XLOC_010584
Gene Name: XLOC_010584
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
199-219
0.008
2
6mer
1484-1510
0.007
1
7mer
394-415
0.004
1
7mer
681-706
0.004
0
6mer
1011-1031
0.002
Not Conserved
LINC01324
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463978
Biotype: lincRNA
Gene id: ENSG00000241767
Gene Name: LINC01324
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-211
0.025
0
RP11-66N24.7
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000622438
Biotype: antisense
Gene id: ENSG00000273618
Gene Name: RP11-66N24.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-144
0.010
6
7mer
375-393
0.006
1
6mer
255-280
0.005
7
7mer
736-755
0.004
1
CYP4F35P
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578285
Biotype: lincRNA
Gene id: ENSG00000265787
Gene Name: CYP4F35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
506-520
0.014
0
6mer
632-653
0.011
0
RP3-395M20.8
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452793
Biotype: antisense
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-110
0.012
1
8mer
272-297
0.008
1
6mer
85-97
0.005
1
RP11-643G5.6
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528319
Biotype: lincRNA
Gene id: ENSG00000255429
Gene Name: RP11-643G5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-121
0.025
1
XLOC_011936
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024643
Biotype: transcript isomorph
Gene id: XLOC_011936
Gene Name: XLOC_011936
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-85
0.025
4
SYNPR-AS1
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488201
Biotype: antisense
Gene id: ENSG00000241359
Gene Name: SYNPR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-41
0.018
1
6mer
302-307
0.007
4
RP11-58E21.3
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553914
Biotype: lincRNA
Gene id: ENSG00000258929
Gene Name: RP11-58E21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-318
0.015
1
7mer
65-76
0.009
1
LINC01346
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412674
Biotype: lincRNA
Gene id: ENSG00000233304
Gene Name: LINC01346
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1020-1044
0.007
1
8mer
761-777
0.006
1
7mer
642-654
0.006
1
6mer
167-178
0.003
1
6mer
2526-2551
0.001
1
6mer
1063-1087
0.001
0
MEG3
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000423456
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1063-1089
0.009
7
7mer
576-594
0.006
1
6mer
152-168
0.005
4
8mer
158-183
0.005
1
LINC00638
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
537-561
0.010
1
6mer
1857-1878
0.009
1
6mer
2204-2217
0.005
0
MIR600HG
hsa-miR-214-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000545631
Biotype: sense_intronic
Gene id: ENSG00000236901
Gene Name: MIR600HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-191
0.007
3
7mer
5288-5307
0.006
1
6mer
76-98
0.005
5
6mer
4676-4701
0.001
4
7mer
2405-2424
0.001
2
6mer
3079-3100
0.001
1
6mer
2131-2148
0.001
0
6mer
2559-2578
0.001
0
6mer
2987-3008
0.000
0
RP11-379B18.5
hsa-miR-214-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468859
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1294-1320
0.007
2
6mer
1589-1614
0.005
1
7mer
1538-1551
0.004
0
6mer
1896-1921
0.004
1
7mer
312-327
0.003
Not Conserved
6mer
939-957
0.001
Not Conserved
RP11-778O17.4
hsa-miR-214-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000558822
Biotype: antisense
Gene id: ENSG00000259541
Gene Name: RP11-778O17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1324-1343
0.012
Not Conserved
6mer
28-55
0.008
1
7mer
832-858
0.004
1
XLOC_005730
hsa-miR-214-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011216
Biotype: transcript isomorph
Gene id: XLOC_005730
Gene Name: XLOC_005730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
551-569
0.009
1
7mer
1159-1181
0.005
1
6mer
236-250
0.004
3
6mer
976-988
0.002
2
6mer
973-988
0.002
3
6mer
1673-1697
0.002
0
RP11-23E19.1
hsa-miR-214-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563968
Biotype: antisense
Gene id: ENSG00000259833
Gene Name: RP11-23E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-213
0.019
1
7mer
190-217
0.006
1
XLOC_002653
hsa-miR-214-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006852
Biotype: transcript isomorph
Gene id: XLOC_002653
Gene Name: XLOC_002653
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-162
0.025
3
MIR600HG
hsa-miR-214-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000449175
Biotype: sense_intronic
Gene id: ENSG00000236901
Gene Name: MIR600HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-198
0.007
3
7mer
5295-5314
0.006
1
6mer
83-105
0.005
5
6mer
4683-4708
0.001
4
7mer
2412-2431
0.001
2
6mer
3086-3107
0.001
1
6mer
2138-2155
0.001
0
6mer
2566-2585
0.001
0
6mer
2994-3015
0.000
0
XLOC_004437
hsa-miR-214-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010001
Biotype: transcript isomorph
Gene id: XLOC_004437
Gene Name: XLOC_004437
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-282
0.009
1
6mer
1844-1858
0.004
1
6mer
375-399
0.004
1
6mer
1038-1050
0.004
3
6mer
683-703
0.003
0
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