LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-276H1.3
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000312019
Biotype: antisense
Gene id: ENSG00000175604
Gene Name: RP11-276H1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1692-1713
0.009
0
8mer
1401-1419
0.008
1
6mer
1494-1501
0.003
0
6mer
1113-1136
0.003
1
6mer
941-963
0.002
1
AC006129.1
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599770
Biotype: lincRNA
Gene id: ENSG00000268355
Gene Name: AC006129.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-386
0.016
Not Conserved
7mer
180-186
0.006
Not Conserved
6mer
80-105
0.004
Not Conserved
RP11-423P10.2
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606229
Biotype: sense_intronic
Gene id: ENSG00000272054
Gene Name: RP11-423P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3596-3615
0.013
1
6mer
243-258
0.005
0
7mer
2480-2488
0.004
3
6mer
2714-2736
0.002
1
LCMT1-AS1
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563962
Biotype: lincRNA
Gene id: ENSG00000260448
Gene Name: LCMT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-619
0.014
2
7mer
582-608
0.007
1
6mer
579-594
0.004
1
LINC00242
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437615
Biotype: lincRNA
Gene id: ENSG00000229214
Gene Name: LINC00242
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-267
0.013
1
7mer
2386-2408
0.007
1
6mer
411-422
0.004
1
6mer
1308-1321
0.001
1
CMB9-22P13.2
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000622944
Biotype: lincRNA
Gene id: ENSG00000279243
Gene Name: CMB9-22P13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-286
0.019
5
6mer
26-46
0.005
0
LINC01254
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000567609
Biotype: lincRNA
Gene id: ENSG00000260913
Gene Name: LINC01254
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1674-1690
0.012
1
7mer
181-201
0.006
0
6mer
178-201
0.004
0
6mer
175-201
0.002
0
RP11-506B6.6
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433684
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-193
0.025
2
CASC8
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502082
Biotype: antisense
Gene id: ENSG00000246228
Gene Name: CASC8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-162
0.021
1
6mer
1091-1112
0.004
4
RP11-420J11.2
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488262
Biotype: lincRNA
Gene id: ENSG00000241696
Gene Name: RP11-420J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
719-733
0.011
3
7mer
815-837
0.010
0
6mer
224-243
0.004
1
AC108488.4
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423704
Biotype: lincRNA
Gene id: ENSG00000242282
Gene Name: AC108488.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
305-322
0.019
0
7mer
540-562
0.005
Not Conserved
AL353997.3
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583394
Biotype: processed_transcript
Gene id: ENSG00000279999
Gene Name: AL353997.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-89
0.015
0
7mer
42-63
0.005
0
6mer
42-68
0.004
1
RP11-750H9.5
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532943
Biotype: antisense
Gene id: ENSG00000255197
Gene Name: RP11-750H9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-552
0.013
0
7mer
496-511
0.006
0
6mer
51-78
0.004
1
6mer
449-469
0.002
1
LCMT1-AS1
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569920
Biotype: lincRNA
Gene id: ENSG00000260448
Gene Name: LCMT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-251
0.014
2
7mer
214-240
0.007
1
6mer
211-226
0.004
1
RP11-593F5.2
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509559
Biotype: lincRNA
Gene id: ENSG00000249066
Gene Name: RP11-593F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-186
0.025
1
AC002116.8
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000473572
Biotype: retained_intron
Gene id: ENSG00000248101
Gene Name: AC002116.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-317
0.014
7
7mer
96-116
0.006
2
6mer
312-324
0.005
5
RP11-177H13.2
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519692
Biotype: antisense
Gene id: ENSG00000253837
Gene Name: RP11-177H13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2488-2506
0.010
3
7mer
1515-1533
0.005
3
6mer
429-452
0.003
2
7mer
1087-1105
0.003
1
8mer
1097-1114
0.002
1
6mer
1697-1715
0.001
3
6mer
1537-1559
0.000
2
LINC-PINT
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451786
Biotype: antisense
Gene id: ENSG00000231721
Gene Name: LINC-PINT
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3340-3359
0.006
4
7mer
2470-2487
0.005
4
7mer
2466-2484
0.003
5
6mer
929-948
0.003
1
6mer
2582-2595
0.003
5
6mer
2455-2472
0.002
10
6mer
1084-1090
0.002
1
RP11-72I8.1
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569858
Biotype: antisense
Gene id: ENSG00000260735
Gene Name: RP11-72I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1907-1934
0.008
1
8mer
476-492
0.005
0
8mer
1022-1032
0.004
0
6mer
408-415
0.003
0
6mer
1784-1799
0.003
1
6mer
1601-1623
0.002
1
XX-C2158C12.2
hsa-miR-214-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000438217
Biotype: lincRNA
Gene id: ENSG00000213863
Gene Name: XX-C2158C12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
557-575
0.021
1
6mer
140-156
0.003
Not Conserved
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