LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
TMEM161B-AS1
hsa-miR-214-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513011
Biotype: antisense
Gene id: ENSG00000247828
Gene Name: TMEM161B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-260
0.019
2
7mer
276-302
0.006
3
HAND2-AS1
hsa-miR-214-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510339
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3012-3039
0.012
3
7mer
881-892
0.006
5
6mer
645-670
0.006
6
6mer
757-780
0.001
0
TTTY15
hsa-miR-214-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000457658
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
582-605
0.025
0
RP11-164D18.2
hsa-miR-214-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443747
Biotype: lincRNA
Gene id: ENSG00000227282
Gene Name: RP11-164D18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-428
0.022
0
6mer
404-421
0.003
0
AC007750.5
hsa-miR-214-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418968
Biotype: antisense
Gene id: ENSG00000236841
Gene Name: AC007750.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
655-680
0.022
1
7mer
376-395
0.003
0
RP11-930O11.1
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000558120
Biotype: lincRNA
Gene id: ENSG00000259719
Gene Name: RP11-930O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-389
0.021
1
6mer
224-240
0.004
1
LINC01474
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453787
Biotype: lincRNA
Gene id: ENSG00000236849
Gene Name: LINC01474
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-302
0.025
5
CTD-2006C1.2
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3742-3763
0.025
0
LINC01474
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423171
Biotype: lincRNA
Gene id: ENSG00000236849
Gene Name: LINC01474
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-302
0.025
5
RP4-717I23.3
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442860
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-303
0.018
1
9mer
246-270
0.007
1
RP5-1157M23.2
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464958
Biotype: antisense
Gene id: ENSG00000243224
Gene Name: RP5-1157M23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-168
0.025
2
RP11-542G1.2
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509215
Biotype: lincRNA
Gene id: ENSG00000251454
Gene Name: RP11-542G1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-354
0.018
1
6mer
231-257
0.007
3
RP3-439F8.1
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426112
Biotype: antisense
Gene id: ENSG00000234869
Gene Name: RP3-439F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2347-2367
0.013
3
6mer
102-120
0.006
0
6mer
1137-1151
0.002
2
8mer
944-959
0.002
0
6mer
805-822
0.001
1
6mer
1406-1426
0.001
0
XLOC_007942
hsa-miR-214-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7451-7466
0.011
0
7mer
2113-2140
0.004
0
6mer
1044-1049
0.002
Not Conserved
7mer
3108-3132
0.002
1
6mer
2847-2870
0.002
0
6mer
3749-3774
0.002
3
6mer
742-756
0.002
Not Conserved
CTD-2240J17.2
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620493
Biotype: lincRNA
Gene id: ENSG00000278029
Gene Name: CTD-2240J17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-77
0.025
1
FAM182B
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_026714.2
Biotype: sense
Gene id: NR_026714.2 (gene)
Gene Name: FAM182B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-642
0.009
0
7mer
5045-5062
0.008
1
8mer
1838-1855
0.006
0
9mer
2221-2246
0.001
0
XLOC_008863
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018000
Biotype: transcript isomorph
Gene id: XLOC_008863
Gene Name: XLOC_008863
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-114
0.012
2
8mer
2490-2512
0.007
0
6mer
2269-2286
0.002
2
6mer
1025-1039
0.002
1
6mer
2266-2286
0.001
3
LOC339593
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_038972.1
Biotype: lincRNA
Gene id: NR_038972.1 (gene)
Gene Name: LOC339593
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2144-2160
0.016
1
8mer
894-919
0.007
2
6mer
1421-1442
0.002
2
PVT1
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000615442
Biotype: misc_RNA
Gene id: ENSG00000249859
Gene Name: PVT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-71
0.025
4
LOC284581
hsa-miR-214-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-276
0.014
0
6mer
2020-2042
0.010
1
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