LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012049
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024774
Biotype: transcript isomorph
Gene id: XLOC_012049
Gene Name: XLOC_012049
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
796-811
0.011
4
7mer
1203-1227
0.008
1
6mer
136-162
0.004
1
6mer
1393-1412
0.003
Not Conserved
RP11-1055B8.3
hsa-miR-214-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570929
Biotype: lincRNA
Gene id: ENSG00000262223
Gene Name: RP11-1055B8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-174
0.013
1
7mer
243-261
0.008
0
6mer
206-225
0.005
1
LINC00892
hsa-miR-214-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000427517
Biotype: retained_intron
Gene id: ENSG00000233093
Gene Name: LINC00892
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
711-727
0.008
0
6mer
67-91
0.008
6
6mer
1552-1561
0.006
2
6mer
539-565
0.004
1
RP11-442O1.3
hsa-miR-214-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621095
Biotype: lincRNA
Gene id: ENSG00000275088
Gene Name: RP11-442O1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-558
0.010
0
8mer
659-680
0.006
0
8mer
600-617
0.005
1
7mer
1924-1946
0.002
0
6mer
1535-1556
0.002
0
XLOC_004456
hsa-miR-214-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009444
Biotype: transcript isomorph
Gene id: XLOC_004456
Gene Name: XLOC_004456
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-260
0.019
2
7mer
276-302
0.006
3
XLOC_011223
hsa-miR-214-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023377
Biotype: transcript isomorph
Gene id: XLOC_011223
Gene Name: XLOC_011223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2471-2486
0.012
5
6mer
1039-1055
0.005
8
7mer
716-739
0.003
1
6mer
1328-1332
0.002
2
6mer
1545-1566
0.002
1
6mer
1575-1594
0.001
1
MLIP-AS1
hsa-miR-214-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000588900
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
534-554
0.011
3
6mer
113-136
0.008
4
6mer
123-141
0.006
1
RP4-717I23.3
hsa-miR-214-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447577
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-199
0.017
1
9mer
142-166
0.006
1
6mer
310-336
0.003
1
TMEM147-AS1
hsa-miR-214-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590717
Biotype: antisense
Gene id: ENSG00000236144
Gene Name: TMEM147-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2478-2503
0.016
3
6mer
2940-2966
0.005
3
6mer
2039-2059
0.002
5
7mer
1113-1131
0.002
1
RP4-530I15.9
hsa-miR-214-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431019
Biotype: antisense
Gene id: ENSG00000232043
Gene Name: RP4-530I15.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4263-4280
0.015
2
6mer
322-333
0.003
1
6mer
1180-1202
0.003
1
6mer
3359-3382
0.002
1
7mer
2506-2529
0.001
1
6mer
3167-3181
0.001
1
RP11-317M11.1
hsa-miR-214-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506950
Biotype: sense_intronic
Gene id: ENSG00000249341
Gene Name: RP11-317M11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-241
0.017
0
7mer
185-201
0.008
1
ENTPD3-AS1
hsa-miR-214-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420850
Biotype: antisense
Gene id: ENSG00000223797
Gene Name: ENTPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
384-406
0.018
1
6mer
213-233
0.007
2
RP1-80N2.3
hsa-miR-214-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000563225
Biotype: lincRNA
Gene id: ENSG00000261211
Gene Name: RP1-80N2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3185-3211
0.011
0
6mer
189-195
0.005
1
6mer
3022-3042
0.005
2
6mer
2202-2223
0.003
3
7mer
1922-1949
0.002
1
LINC00694
hsa-miR-214-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000416124
Biotype: lincRNA
Gene id: ENSG00000225873
Gene Name: LINC00694
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-589
0.023
1
6mer
121-143
0.002
0
LINC00607
hsa-miR-214-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413563
Biotype: lincRNA
Gene id: ENSG00000235770
Gene Name: LINC00607
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-420
0.020
1
6mer
22-45
0.005
Not Conserved
RP11-753H16.3
hsa-miR-214-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550474
Biotype: antisense
Gene id: ENSG00000258137
Gene Name: RP11-753H16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-461
0.025
6
RP11-81H3.2
hsa-miR-214-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000515416
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-134
0.018
0
6mer
220-238
0.007
0
LINC00606
hsa-miR-214-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436060
Biotype: lincRNA
Gene id: ENSG00000226567
Gene Name: LINC00606
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-46
0.015
3
6mer
86-109
0.006
4
6mer
71-96
0.004
1
XLOC_009145
hsa-miR-214-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019312
Biotype: transcript isomorph
Gene id: XLOC_009145
Gene Name: XLOC_009145
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-301
0.025
1
NUTM2B-AS1
hsa-miR-214-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000488805
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-251
0.018
1
7mer
235-244
0.007
0
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