LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-439C15.4
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521498
Biotype: lincRNA
Gene id: ENSG00000253764
Gene Name: RP11-439C15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-118
0.019
0
8mer
217-237
0.007
0
ADAMTS9-AS1
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597944
Biotype: antisense
Gene id: ENSG00000241158
Gene Name: ADAMTS9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
640-665
0.022
2
6mer
370-394
0.003
1
RP11-112H10.4
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580769
Biotype: antisense
Gene id: ENSG00000264672
Gene Name: RP11-112H10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
964-981
0.019
0
7mer
784-797
0.007
1
SMG7-AS1
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624060
Biotype: TEC
Gene id: ENSG00000232860
Gene Name: SMG7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-555
0.025
3
PCBP1-AS1
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439670
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1322-1344
0.018
3
6mer
1452-1462
0.004
2
7mer
678-703
0.003
1
XLOC_012013
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024732
Biotype: transcript isomorph
Gene id: XLOC_012013
Gene Name: XLOC_012013
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-168
0.020
1
6mer
36-61
0.005
2
MIR7515HG
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587748
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
788-813
0.017
1
7mer
97-111
0.008
0
LINC00484
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423719
Biotype: lincRNA
Gene id: ENSG00000235641
Gene Name: LINC00484
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-125
0.009
1
6mer
746-773
0.009
5
6mer
2289-2314
0.002
0
6mer
2290-2305
0.002
0
6mer
909-931
0.001
1
6mer
1414-1436
0.001
1
6mer
1431-1458
0.001
0
RP11-203J24.9
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000476274
Biotype: processed_transcript
Gene id: ENSG00000257524
Gene Name: RP11-203J24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
382-400
0.014
10
6mer
386-400
0.007
9
7mer
47-67
0.005
0
RP11-1055B8.3
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612902
Biotype: lincRNA
Gene id: ENSG00000262223
Gene Name: RP11-1055B8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-101
0.015
1
7mer
170-188
0.006
0
6mer
133-152
0.004
1
RP11-141J10.2
hsa-miR-214-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000415119
Biotype: antisense
Gene id: ENSG00000223966
Gene Name: RP11-141J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-287
0.016
1
7mer
285-306
0.009
0
XLOC_010439
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021838
Biotype: transcript isomorph
Gene id: XLOC_010439
Gene Name: XLOC_010439
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-97
0.025
2
MEG3
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
583-601
0.006
1
6mer
159-175
0.004
4
8mer
165-190
0.004
1
6mer
1584-1606
0.002
1
7mer
2718-2738
0.002
1
6mer
3714-3741
0.002
0
6mer
5426-5443
0.002
2
8mer
2527-2552
0.001
1
6mer
1717-1736
0.001
3
6mer
1620-1638
0.001
2
6mer
2499-2518
0.001
0
RP11-120M18.2
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592030
Biotype: processed_transcript
Gene id: ENSG00000267009
Gene Name: RP11-120M18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-563
0.025
6
LOC100129034
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027406.1
Biotype: antisense
Gene id: NR_027406.1 (gene)
Gene Name: LOC100129034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5663-5674
0.006
1
7mer
2371-2393
0.005
0
6mer
5515-5539
0.004
1
6mer
4848-4855
0.003
3
6mer
5315-5337
0.003
2
6mer
5315-5340
0.003
2
6mer
1008-1024
0.001
2
6mer
1876-1893
0.001
1
RP11-264B17.3
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000354453
Biotype: processed_transcript
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-396
0.013
6
6mer
1575-1599
0.004
1
6mer
1474-1499
0.003
1
6mer
376-399
0.003
5
6mer
833-847
0.002
1
6mer
1527-1547
0.001
1
AP000708.1
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527818
Biotype: antisense
Gene id: ENSG00000255537
Gene Name: AP000708.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3412-3419
0.015
0
7mer
2652-2666
0.006
1
6mer
2964-2991
0.003
0
6mer
479-495
0.002
1
RP11-84A19.3
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000527035
Biotype: antisense
Gene id: ENSG00000254545
Gene Name: RP11-84A19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-256
0.016
9
8mer
382-401
0.009
2
RP1-27K12.2
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000502390
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3507-3516
0.008
2
6mer
2900-2917
0.006
3
7mer
3201-3226
0.006
0
6mer
3418-3440
0.005
1
C14orf64
hsa-miR-214-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556138
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-207
0.025
1
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