LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_001671
hsa-miR-214-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9870-9885
0.025
0
8mer
7964-7973
0.009
0
8mer
5266-5292
0.009
Not Conserved
8mer
7437-7460
0.005
0
6mer
7382-7398
0.003
0
8mer
6848-6866
0.002
Not Conserved
7mer
6281-6305
0.001
Not Conserved
6mer
1203-1224
0.001
Not Conserved
6mer
6306-6331
0.001
0
7mer
6290-6309
0.001
Not Conserved
RP5-857K21.2
hsa-miR-214-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423796
Biotype: lincRNA
Gene id: ENSG00000235146
Gene Name: RP5-857K21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-503
0.049
0
7mer
510-530
0.007
Not Conserved
RP1-232P20.1
hsa-miR-214-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602674
Biotype: antisense
Gene id: ENSG00000269985
Gene Name: RP1-232P20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-50
0.046
1
8mer
419-444
0.010
1
AC004540.5
hsa-miR-214-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421862
Biotype: lincRNA
Gene id: ENSG00000214870
Gene Name: AC004540.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-471
0.051
7
6mer
633-656
0.005
3
RP11-44F21.5
hsa-miR-214-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567197
Biotype: lincRNA
Gene id: ENSG00000260265
Gene Name: RP11-44F21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-79
0.056
0
AC006262.5
hsa-miR-214-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598518
Biotype: lincRNA
Gene id: ENSG00000268621
Gene Name: AC006262.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
601-618
0.056
0
RP11-216L13.18
hsa-miR-214-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000471502
Biotype: retained_intron
Gene id: ENSG00000272679
Gene Name: RP11-216L13.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-98
0.031
3
7mer
92-112
0.025
4
LINC01168
hsa-miR-214-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000461291
Biotype: lincRNA
Gene id: ENSG00000240707
Gene Name: LINC01168
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-243
0.017
1
8mer
257-276
0.015
0
8mer
517-534
0.007
1
6mer
154-174
0.004
Not Conserved
8mer
4028-4045
0.004
1
7mer
4471-4493
0.003
Not Conserved
7mer
1680-1699
0.003
1
6mer
3167-3188
0.001
1
6mer
609-635
0.001
1
6mer
1289-1314
0.001
0
XLOC_014147
hsa-miR-214-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029754
Biotype: transcript isomorph
Gene id: XLOC_014147
Gene Name: XLOC_014147
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
696-718
0.022
0
6mer
727-754
0.017
0
7mer
558-584
0.016
0
SHANK3
hsa-miR-214-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
785-810
0.011
4
7mer
589-608
0.011
8
8mer
4550-4565
0.007
7
7mer
6367-6383
0.006
3
6mer
4272-4298
0.003
8
8mer
5903-5918
0.003
1
7mer
3935-3953
0.002
7
7mer
2361-2375
0.002
1
7mer
3184-3203
0.002
3
7mer
672-698
0.002
4
6mer
1184-1202
0.002
3
6mer
5304-5327
0.002
6
6mer
3825-3844
0.001
1
6mer
3191-3206
0.000
1
FGF14-IT1
hsa-miR-214-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437115
Biotype: sense_intronic
Gene id: ENSG00000243319
Gene Name: FGF14-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-78
0.040
1
7mer
1691-1710
0.007
0
6mer
208-232
0.005
2
6mer
1600-1615
0.004
2
AP005273.1
hsa-miR-214-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000444862
Biotype: lincRNA
Gene id: ENSG00000232500
Gene Name: AP005273.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-479
0.029
1
8mer
36-53
0.026
1
ZNRD1-AS1
hsa-miR-214-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-634
0.015
Not Conserved
7mer
7871-7876
0.011
2
8mer
2027-2040
0.007
0
6mer
8842-8866
0.006
1
6mer
8619-8644
0.005
2
6mer
8479-8495
0.003
1
6mer
8317-8335
0.002
1
6mer
2238-2243
0.002
1
6mer
2119-2133
0.002
1
6mer
2309-2326
0.001
0
LINC00691
hsa-miR-214-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432505
Biotype: lincRNA
Gene id: ENSG00000224074
Gene Name: LINC00691
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-58
0.053
1
6mer
930-955
0.002
0
DGCR5
hsa-miR-214-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438934
Biotype: antisense
Gene id: ENSG00000237517
Gene Name: DGCR5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5106-5124
0.024
0
8mer
4462-4484
0.009
0
8mer
4997-5021
0.006
Not Conserved
8mer
2120-2141
0.003
0
7mer
2768-2794
0.003
0
7mer
1489-1514
0.003
0
6mer
4117-4137
0.002
0
6mer
3381-3405
0.001
0
6mer
3926-3943
0.001
0
6mer
3807-3830
0.001
0
6mer
3456-3479
0.001
0
6mer
3939-3964
0.000
0
6mer
2120-2144
0.000
0
NEAT1
hsa-miR-214-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11743-11768
0.006
1
8mer
15315-15331
0.005
0
6mer
21234-21256
0.003
5
8mer
15325-15344
0.003
1
8mer+wobble
12216-12238
0.003
1
7mer
20957-20983
0.003
1
7mer
18369-18391
0.003
2
7mer
4373-4395
0.003
1
6mer
20605-20625
0.002
1
6mer
21824-21848
0.002
3
6mer
8550-8573
0.002
1
7mer
4809-4829
0.002
1
7mer
21656-21678
0.002
1
6mer
3566-3580
0.002
2
6mer
16350-16364
0.002
2
6mer
5046-5067
0.002
1
6mer
3897-3917
0.001
1
6mer
11529-11548
0.001
1
6mer
19417-19438
0.001
1
6mer
21247-21259
0.001
6
6mer
5163-5185
0.001
1
6mer
13196-13217
0.001
2
6mer
5599-5617
0.001
0
7mer
19422-19442
0.001
1
6mer
13466-13489
0.001
1
RP11-47L3.1
hsa-miR-214-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591886
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-83
0.054
0
CTD-3051D23.1
hsa-miR-214-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556430
Biotype: lincRNA
Gene id: ENSG00000258811
Gene Name: CTD-3051D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1688-1707
0.016
1
7mer
459-477
0.012
1
6mer
3170-3191
0.007
1
7mer
1916-1941
0.007
1
6mer
677-698
0.004
0
6mer
348-369
0.003
0
6mer
2178-2193
0.003
1
6mer
1448-1464
0.002
0
XLOC_010009
hsa-miR-214-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020710
Biotype: transcript isomorph
Gene id: XLOC_010009
Gene Name: XLOC_010009
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-567
0.054
1
LINC00839
hsa-miR-214-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2034-2056
0.035
1
6mer
2151-2170
0.019
1
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