LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-219A15.4
hsa-miR-214-3p
0.422
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000602730
Biotype: processed_transcript
Gene id: ENSG00000272815
Gene Name: RP11-219A15.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:16788030-16788058
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-21C4.1
hsa-miR-214-3p
0.422
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000520834
Biotype: antisense
Gene id: ENSG00000254102
Gene Name: RP11-21C4.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBAC
IP
Tested Cell Line: LCLBAC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:64574990-64575018
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-333E13.2
hsa-miR-214-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000510152
Biotype: processed_pseudogene
Gene id: ENSG00000250568
Gene Name: RP11-333E13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:39973327-39973355
exon
HITS-CLIP
DIRECT
LncBasev2
4:39973327-39973355
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-379I19.1
hsa-miR-214-3p
0.666
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000521456
Biotype: lincRNA
Gene id: ENSG00000253260
Gene Name: RP11-379I19.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:59593654-59593682
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-39C10.1
hsa-miR-214-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000509378
Biotype: processed_pseudogene
Gene id: ENSG00000250746
Gene Name: RP11-39C10.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:164190179-164190207
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-438B23.2
hsa-miR-214-3p
0.694
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:27941149-27941177
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-441F2.2
hsa-miR-214-3p
0.479
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000564074
Biotype: sense_intronic
Gene id: ENSG00000260198
Gene Name: RP11-441F2.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:56302727-56302755
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-462G2.1
hsa-miR-214-3p
0.373
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000418403
Biotype: lincRNA
Gene id: ENSG00000237643
Gene Name: RP11-462G2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:70399247-70399275
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-46A10.5
hsa-miR-214-3p
0.584
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000358073
Biotype: antisense
Gene id: ENSG00000243155
Gene Name: RP11-46A10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:180976454-180976482
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-492M23.2
hsa-miR-214-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000480465
Biotype: processed_pseudogene
Gene id: ENSG00000229605
Gene Name: RP11-492M23.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:28899270-28899298
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-531A24.3
hsa-miR-214-3p
0.452
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000564832
Biotype: lincRNA
Gene id: ENSG00000260838
Gene Name: RP11-531A24.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:72948404-72948432
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-64K7.1
hsa-miR-214-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000470499
Biotype: processed_pseudogene
Gene id: ENSG00000240854
Gene Name: RP11-64K7.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:132176516-132176547
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-715J22.1
hsa-miR-214-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000468708
Biotype: processed_pseudogene
Gene id: ENSG00000243445
Gene Name: RP11-715J22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:2332597-2332625
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-73M18.8
hsa-miR-214-3p
0.378
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000602422
Biotype: sense_intronic
Gene id: ENSG00000269958
Gene Name: RP11-73M18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:103696571-103696599
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-178F10.3
hsa-miR-214-3p
0.528
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000577764
Biotype: lincRNA
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:18324521-18324552
exon
HITS-CLIP
DIRECT
LncBasev2
17:18324521-18324552
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-802E16.3
hsa-miR-214-3p
0.417
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000526897
Biotype: antisense
Gene id: ENSG00000255031
Gene Name: RP11-802E16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:68053019-68053047
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-890B15.3
hsa-miR-214-3p
0.475
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000525716
Biotype: lincRNA
Gene id: ENSG00000255455
Gene Name: RP11-890B15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:130866426-130866465
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-959F10.5
hsa-miR-214-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000472881
Biotype: processed_pseudogene
Gene id: ENSG00000253547
Gene Name: RP11-959F10.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:63046819-63046847
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-98I9.4
hsa-miR-214-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000418945
Biotype: antisense
Gene id: ENSG00000228506
Gene Name: RP11-98I9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:99431356-99431384
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-228H13.1
hsa-miR-214-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000600955
Biotype: processed_pseudogene
Gene id: ENSG00000227311
Gene Name: RP1-228H13.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:40333344-40333372
exon
HITS-CLIP
DIRECT
LncBasev2
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