LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_001826
hsa-miR-214-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003088
Biotype: transcript isomorph
Gene id: XLOC_001826
Gene Name: XLOC_001826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1156-1176
0.010
0
7mer
951-965
0.008
2
6mer
413-438
0.005
1
6mer
897-922
0.003
2
AC007292.3
hsa-miR-214-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593524
Biotype: antisense
Gene id: ENSG00000269318
Gene Name: AC007292.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
526-550
0.020
3
7mer
365-383
0.006
1
RP11-1012E15.2
hsa-miR-214-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000569625
Biotype: sense_intronic
Gene id: ENSG00000259868
Gene Name: RP11-1012E15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-260
0.025
1
AP000472.2
hsa-miR-214-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419467
Biotype: lincRNA
Gene id: ENSG00000233215
Gene Name: AP000472.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-386
0.013
0
7mer
358-374
0.012
0
RP11-2H8.2
hsa-miR-214-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552780
Biotype: lincRNA
Gene id: ENSG00000257410
Gene Name: RP11-2H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1004-1028
0.007
1
6mer
1238-1252
0.007
1
6mer
900-925
0.004
1
6mer
230-251
0.004
0
6mer
841-853
0.004
1
RP11-77P16.4
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000507856
Biotype: lincRNA
Gene id: ENSG00000249846
Gene Name: RP11-77P16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-436
0.013
0
7mer
371-384
0.006
0
6mer
308-333
0.006
1
CTD-2554C21.3
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000443870
Biotype: lincRNA
Gene id: ENSG00000229481
Gene Name: CTD-2554C21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1668-1685
0.025
5
TTTY15
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3444-3467
0.009
0
6mer
2674-2698
0.006
0
6mer
3104-3121
0.006
0
6mer
1835-1860
0.005
0
XLOC_008295
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3444-3467
0.009
0
6mer
2674-2698
0.006
0
6mer
3104-3121
0.006
0
6mer
1835-1860
0.005
0
RP3-333B15.4
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000619495
Biotype: lincRNA
Gene id: ENSG00000260202
Gene Name: RP3-333B15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-496
0.019
2
7mer
461-480
0.006
0
LINC00207
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000334566
Biotype: lincRNA
Gene id: ENSG00000187012
Gene Name: LINC00207
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
392-397
0.011
0
6mer
389-400
0.008
3
6mer
398-423
0.006
1
LOC148696
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026817.1
Biotype: lincRNA
Gene id: NR_026817.1 (gene)
Gene Name: LOC148696
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3653-3672
0.009
3
7mer
553-576
0.005
1
6mer
942-953
0.003
3
8mer
1146-1165
0.003
1
6mer
716-730
0.002
1
6mer
1447-1471
0.001
Not Conserved
6mer
2557-2579
0.001
1
7mer
2863-2877
0.001
1
RP11-262H14.3
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586625
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
90-94
0.010
3
8mer
677-693
0.009
0
6mer
157-167
0.004
0
6mer
3-25
0.003
Not Conserved
RP11-543H23.2
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584753
Biotype: antisense
Gene id: ENSG00000266840
Gene Name: RP11-543H23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-289
0.019
1
6mer
287-305
0.006
4
C1RL-AS1
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536679
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-354
0.006
0
6mer
351-373
0.003
1
6mer
351-376
0.003
0
6mer
348-361
0.003
1
6mer
349-370
0.003
1
6mer
348-367
0.003
1
6mer
348-364
0.003
1
RP11-69H7.2
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563803
Biotype: lincRNA
Gene id: ENSG00000260660
Gene Name: RP11-69H7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-477
0.020
3
6mer
209-223
0.006
1
MIR7515HG
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590971
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-766
0.017
1
7mer
98-112
0.008
0
CTA-941F9.10
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5649-5670
0.007
0
6mer
556-570
0.003
Not Conserved
6mer
52-68
0.003
Not Conserved
6mer
21318-21335
0.002
1
6mer
16389-16411
0.001
1
6mer
19341-19364
0.001
1
6mer
8144-8164
0.001
0
6mer
5182-5195
0.001
0
6mer
14032-14041
0.001
0
6mer
11173-11194
0.001
1
6mer
6786-6810
0.001
1
6mer
11265-11282
0.001
1
6mer
6173-6199
0.001
1
RP11-259K5.2
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604992
Biotype: antisense
Gene id: ENSG00000270194
Gene Name: RP11-259K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1812-1835
0.017
5
6mer
1800-1820
0.005
8
6mer
1803-1820
0.004
8
TPTEP1
hsa-miR-214-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000558085
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
996-1010
0.016
2
7mer
20-43
0.007
Not Conserved
6mer
22-46
0.002
Not Conserved
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