LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
TYMSOS
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000323813
Biotype: antisense
Gene id: ENSG00000176912
Gene Name: TYMSOS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-173
0.023
0
7mer
655-673
0.003
Not Conserved
AC004941.3
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000417506
Biotype: antisense
Gene id: ENSG00000228151
Gene Name: AC004941.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2941-2965
0.010
0
7mer
2774-2793
0.006
1
6mer
3070-3095
0.006
1
6mer
454-480
0.004
1
C10orf40
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000521074
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-190
0.010
0
7mer
4110-4136
0.007
1
6mer
4041-4066
0.005
2
7mer
2745-2759
0.002
0
6mer
2116-2135
0.001
Not Conserved
RP5-865N13.1
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441459
Biotype: lincRNA
Gene id: ENSG00000236372
Gene Name: RP5-865N13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
542-558
0.018
1
8mer
802-818
0.008
0
LINC01524
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428009
Biotype: lincRNA
Gene id: ENSG00000234948
Gene Name: LINC01524
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4253-4274
0.009
1
7mer
3611-3636
0.006
1
6mer
459-482
0.004
1
6mer
1094-1108
0.002
1
6mer
2173-2191
0.002
3
6mer
811-829
0.001
0
6mer
1821-1844
0.001
Not Conserved
6mer
2455-2473
0.000
0
XLOC_009324
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020022
Biotype: transcript isomorph
Gene id: XLOC_009324
Gene Name: XLOC_009324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-453
0.013
1
7mer
297-317
0.008
0
6mer
383-400
0.004
0
RP11-431J17.1
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000517407
Biotype: lincRNA
Gene id: ENSG00000253170
Gene Name: RP11-431J17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-133
0.018
3
6mer
67-82
0.008
2
CFLAR-AS1
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601974
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-307
0.013
1
7mer
604-615
0.013
1
RP11-1028N23.4
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551940
Biotype: lincRNA
Gene id: ENSG00000257407
Gene Name: RP11-1028N23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-330
0.026
0
RP11-1070N10.6
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553913
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2990-3013
0.006
4
7mer
1353-1371
0.005
1
7mer
2762-2777
0.004
2
6mer
472-489
0.004
1
6mer
2057-2082
0.002
1
7mer
2499-2525
0.001
0
8mer+mismatch
2530-2549
0.001
1
7mer
1423-1441
0.001
0
6mer
1366-1389
0.000
0
6mer
1450-1468
0.000
0
RP11-459E5.1
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521141
Biotype: antisense
Gene id: ENSG00000253125
Gene Name: RP11-459E5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-109
0.011
5
7mer
310-331
0.010
2
6mer
323-334
0.005
5
AC022173.2
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000418554
Biotype: antisense
Gene id: ENSG00000237243
Gene Name: AC022173.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-107
0.015
Not Conserved
6mer
470-486
0.010
3
RP11-121A8.1
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609522
Biotype: lincRNA
Gene id: ENSG00000272908
Gene Name: RP11-121A8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1874-1897
0.017
1
6mer
1323-1342
0.008
2
TTC28-AS1
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428584
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
755-777
0.006
1
9mer
1585-1608
0.004
1
6mer
496-521
0.004
1
6mer
827-843
0.003
10
6mer
971-992
0.003
9
7mer
2162-2179
0.002
0
6mer
828-851
0.002
8
6mer
4525-4542
0.001
0
9mer
2592-2607
0.001
Not Conserved
LINC00898
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000380990
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1015-1031
0.015
Not Conserved
6mer
552-572
0.004
2
6mer
426-448
0.003
0
6mer
3057-3070
0.002
0
6mer
3518-3533
0.002
1
6mer
1188-1211
0.001
1
RP11-120M18.2
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586515
Biotype: processed_transcript
Gene id: ENSG00000267009
Gene Name: RP11-120M18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-457
0.026
6
RP11-500C11.3
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606771
Biotype: antisense
Gene id: ENSG00000272269
Gene Name: RP11-500C11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-43
0.015
5
6mer
4-29
0.007
4
6mer
865-884
0.003
0
MIR133A1HG
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581613
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-413
0.019
2
7mer
434-442
0.006
Not Conserved
NUTM2B-AS1
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000483080
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
560-572
0.019
1
7mer
556-565
0.006
0
MEG3
hsa-miR-214-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046470.2
Biotype: lincRNA
Gene id: NR_046470.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
967-993
0.007
7
7mer
594-612
0.006
1
6mer
170-186
0.005
4
8mer
176-201
0.004
1
7mer
1077-1097
0.004
1
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