LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-66B24.4
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560351
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
535-558
0.013
1
6mer
626-648
0.003
2
6mer
3214-3236
0.003
Not Conserved
7mer
2885-2910
0.002
0
6mer
836-855
0.002
1
6mer
873-896
0.002
Not Conserved
6mer
1631-1648
0.001
0
XLOC_012004
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1194-1220
0.009
6
7mer
1735-1758
0.006
7
6mer
2512-2531
0.004
2
6mer
719-736
0.004
6
6mer
1322-1341
0.003
0
RP11-363N22.3
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000615314
Biotype: retained_intron
Gene id: ENSG00000205740
Gene Name: RP11-363N22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2984-2989
0.019
0
6mer
917-939
0.005
3
6mer
2376-2398
0.002
Not Conserved
XLOC_000918
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000020
Biotype: transcript isomorph
Gene id: XLOC_000918
Gene Name: XLOC_000918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-354
0.015
1
9mer
297-321
0.006
1
6mer
591-611
0.003
1
6mer
4292-4318
0.003
1
CTD-2201G3.1
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000416046
Biotype: antisense
Gene id: ENSG00000232633
Gene Name: CTD-2201G3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3284-3306
0.007
1
7mer
793-804
0.006
1
6mer
3301-3325
0.003
1
9mer
2331-2354
0.003
1
7mer
2954-2975
0.003
0
6mer
2550-2576
0.002
0
6mer
837-859
0.001
1
6mer
1222-1245
0.001
0
XLOC_004269
hsa-miR-214-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009233
Biotype: transcript isomorph
Gene id: XLOC_004269
Gene Name: XLOC_004269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-208
0.012
0
6mer
1942-1968
0.008
1
6mer
376-398
0.003
1
6mer
666-689
0.002
0
6mer
764-789
0.002
1
LINC01441
hsa-miR-214-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433766
Biotype: lincRNA
Gene id: ENSG00000224008
Gene Name: LINC01441
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-578
0.026
1
XLOC_006497
hsa-miR-214-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012913
Biotype: transcript isomorph
Gene id: XLOC_006497
Gene Name: XLOC_006497
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4456-4473
0.007
0
7mer
2822-2834
0.006
1
6mer
4782-4807
0.004
2
6mer
4779-4792
0.003
2
6mer
1012-1034
0.003
3
6mer
4776-4792
0.002
1
6mer
1210-1235
0.001
0
6mer
2794-2808
0.001
1
CTD-2234N14.2
hsa-miR-214-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000609688
Biotype: lincRNA
Gene id: ENSG00000272981
Gene Name: CTD-2234N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-351
0.019
6
6mer
267-292
0.007
2
RP11-1070N10.6
hsa-miR-214-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000488933
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2894-2917
0.006
4
7mer
1353-1371
0.005
1
7mer
2666-2681
0.004
2
6mer
472-489
0.004
1
6mer
2057-2082
0.002
1
7mer
2403-2429
0.001
0
8mer+mismatch
2434-2453
0.001
1
7mer
1423-1441
0.001
0
6mer
1366-1389
0.000
0
6mer
1450-1468
0.000
0
RP11-109D24.1
hsa-miR-214-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562568
Biotype: sense_intronic
Gene id: ENSG00000260600
Gene Name: RP11-109D24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-62
0.018
1
7mer
1087-1104
0.008
0
RP11-410D17.2
hsa-miR-214-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568134
Biotype: lincRNA
Gene id: ENSG00000245768
Gene Name: RP11-410D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-229
0.019
3
6mer
469-486
0.007
0
RP11-403H13.1
hsa-miR-214-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000445708
Biotype: sense_intronic
Gene id: ENSG00000224972
Gene Name: RP11-403H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
233-240
0.010
3
6mer
103-111
0.006
1
6mer
323-341
0.005
0
6mer
449-464
0.005
2
RP11-25I9.3
hsa-miR-214-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000366160
Biotype: pseudogene
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1198-1218
0.010
2
6mer
814-830
0.004
4
6mer
1779-1805
0.004
2
6mer
1848-1861
0.003
4
6mer
667-688
0.002
3
6mer
872-890
0.001
1
RP4-723E3.1
hsa-miR-214-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110038.1
Biotype: lincRNA
Gene id: NR_110038.1 (gene)
Gene Name: RP4-723E3.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4253-4274
0.010
1
7mer
3611-3636
0.006
1
6mer
459-482
0.004
1
6mer
1094-1108
0.002
1
6mer
2173-2191
0.002
3
6mer
811-829
0.001
0
6mer
1821-1844
0.001
Not Conserved
6mer
2455-2473
0.000
0
FOCAD-AS1
hsa-miR-214-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439876
Biotype: lincRNA
Gene id: ENSG00000227071
Gene Name: FOCAD-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-341
0.026
6
LINC00282
hsa-miR-214-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_027047.1
Biotype: lincRNA
Gene id: NR_027047.1 (gene)
Gene Name: LINC00282
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3462-3485
0.006
1
7mer
3637-3645
0.004
0
6mer
694-712
0.004
1
7mer
3723-3748
0.003
0
6mer
3022-3039
0.003
3
7mer
3018-3039
0.002
1
6mer
1948-1969
0.002
3
6mer
2211-2231
0.002
1
6mer
2699-2724
0.001
1
RP11-283G6.5
hsa-miR-214-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540625
Biotype: antisense
Gene id: ENSG00000255750
Gene Name: RP11-283G6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-63
0.026
8
AC008079.10
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11357-11382
0.003
1
6mer
975-992
0.003
3
7mer
7698-7715
0.002
Not Conserved
6mer
679-703
0.002
Not Conserved
6mer
17273-17289
0.002
1
6mer
1877-1885
0.002
1
7mer
13164-13178
0.001
1
6mer
3783-3799
0.001
1
6mer
5727-5736
0.001
0
7mer
2576-2603
0.001
1
6mer
3351-3374
0.001
2
6mer
14933-14959
0.001
2
6mer
3949-3974
0.001
0
6mer
8736-8763
0.001
1
6mer
8665-8683
0.001
1
6mer
11328-11350
0.000
0
6mer
5644-5668
0.000
Not Conserved
TSG1
hsa-miR-214-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_015362.1
Biotype: lincRNA
Gene id: NR_015362.1 (gene)
Gene Name: TSG1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
184-209
0.006
1
7mer
1081-1091
0.006
1
7mer
3811-3828
0.005
1
6mer
467-489
0.004
1
6mer
2649-2670
0.002
0
6mer
1473-1491
0.002
0
6mer
1134-1159
0.001
1
6mer
1558-1581
0.001
1
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