LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-804H8.6
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609204
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
679-704
0.018
5
6mer
487-508
0.006
3
6mer
503-529
0.002
1
XLOC_007644
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016268
Biotype: transcript isomorph
Gene id: XLOC_007644
Gene Name: XLOC_007644
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
562-584
0.013
1
6mer
113-140
0.005
1
6mer
422-444
0.004
1
6mer
581-601
0.003
0
RP4-717I23.3
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451302
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-281
0.017
1
9mer
224-248
0.006
1
6mer
751-777
0.003
1
XLOC_001200
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-123
0.007
Not Conserved
7mer
2900-2923
0.005
1
6mer
294-311
0.003
1
6mer
1678-1685
0.002
0
6mer
7412-7433
0.002
1
6mer
6739-6751
0.002
0
6mer
4570-4578
0.002
2
6mer
7612-7629
0.002
4
7mer
3776-3799
0.001
0
XLOC_000730
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000016
Biotype: transcript isomorph
Gene id: XLOC_000730
Gene Name: XLOC_000730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5112-5136
0.007
Not Conserved
7mer
4447-4466
0.007
0
6mer
2180-2200
0.003
6
6mer
726-747
0.002
1
6mer
1665-1690
0.002
4
6mer
4790-4803
0.002
1
6mer
3585-3610
0.001
1
6mer
2357-2377
0.001
1
6mer
2354-2377
0.000
1
RP11-406A20.4
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000426593
Biotype: lincRNA
Gene id: ENSG00000227555
Gene Name: RP11-406A20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-190
0.019
2
6mer
423-442
0.004
3
6mer
1259-1277
0.003
1
FLJ45079
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000374983
Biotype: lincRNA
Gene id: ENSG00000204283
Gene Name: FLJ45079
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
823-840
0.013
1
8mer
3708-3727
0.004
1
6mer
4049-4063
0.002
0
7mer
1343-1359
0.002
2
7mer
819-832
0.002
1
6mer
4207-4229
0.002
1
6mer
2728-2748
0.001
2
6mer
2725-2748
0.000
1
INHBA-AS1
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415848
Biotype: antisense
Gene id: ENSG00000224116
Gene Name: INHBA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2604-2621
0.010
1
6mer
82-102
0.010
5
6mer
2855-2878
0.003
2
6mer
541-565
0.002
1
SPAG5-AS1
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000424210
Biotype: antisense
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1455-1475
0.014
8
8mer
366-390
0.011
1
NUTM2B-AS1
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601369
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
897-909
0.019
1
7mer
893-902
0.006
0
6mer
1196-1214
0.002
0
LINC01267
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000502417
Biotype: lincRNA
Gene id: ENSG00000251576
Gene Name: LINC01267
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2201-2217
0.011
2
7mer
1993-2017
0.008
0
7mer
1807-1823
0.004
0
6mer
408-431
0.002
0
INHBA-AS1
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_027118.1
Biotype: antisense
Gene id: NR_027118.1 (gene)
Gene Name: INHBA-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2604-2621
0.011
1
6mer
82-102
0.010
5
6mer
2855-2878
0.003
2
6mer
541-565
0.002
1
LOC100130872
hsa-miR-214-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_024569.1
Biotype: sense
Gene id: NR_024569.1 (gene)
Gene Name: LOC100130872
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4501-4522
0.010
1
7mer
4639-4655
0.006
0
6mer
555-573
0.002
0
7mer
1025-1041
0.002
1
6mer
2435-2442
0.002
1
6mer
2863-2890
0.002
Not Conserved
6mer
885-903
0.001
1
6mer
2769-2791
0.001
0
6mer
2816-2838
0.001
0
RP11-105N13.4
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582044
Biotype: processed_transcript
Gene id: ENSG00000263715
Gene Name: RP11-105N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-519
0.022
11
6mer
223-240
0.004
1
RP11-500G22.5
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000620490
Biotype: antisense
Gene id: ENSG00000273891
Gene Name: RP11-500G22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1923-1934
0.026
7
RP11-434D9.1
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515227
Biotype: lincRNA
Gene id: ENSG00000249364
Gene Name: RP11-434D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
598-619
0.026
2
DARS-AS1
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601586
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-561
0.022
5
6mer
440-457
0.004
3
HAND2-AS1
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502896
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4882-4909
0.012
3
7mer
460-479
0.008
1
7mer
2751-2762
0.003
5
6mer
2515-2540
0.003
6
6mer
2627-2650
0.001
0
FAM138E
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000507796
Biotype: lincRNA
Gene id: ENSG00000248893
Gene Name: FAM138E
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1179-1184
0.016
Not Conserved
7mer
812-830
0.005
Not Conserved
6mer
335-353
0.004
0
XLOC_003772
hsa-miR-214-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008929
Biotype: transcript isomorph
Gene id: XLOC_003772
Gene Name: XLOC_003772
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
950-976
0.016
1
7mer
1701-1713
0.004
1
6mer
1670-1687
0.002
0
6mer
1020-1045
0.002
1
6mer
970-979
0.001
1
6mer
1831-1856
0.001
0
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