LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-1L9.1
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446964
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-64
0.015
3
6mer
21-39
0.007
2
6mer
34-54
0.004
1
RP11-73O6.3
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415964
Biotype: antisense
Gene id: ENSG00000227678
Gene Name: RP11-73O6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-88
0.026
8
XLOC_007214
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015168
Biotype: transcript isomorph
Gene id: XLOC_007214
Gene Name: XLOC_007214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
521-540
0.014
1
7mer
2445-2467
0.009
1
6mer
2334-2360
0.003
0
XLOC_009194
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019370
Biotype: transcript isomorph
Gene id: XLOC_009194
Gene Name: XLOC_009194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
75-96
0.005
3
7mer
1846-1872
0.005
1
7mer
2346-2363
0.004
2
6mer
2128-2146
0.003
1
9mer
763-783
0.003
1
6mer
1777-1798
0.002
0
6mer
1594-1616
0.002
0
6mer
1192-1205
0.001
1
6mer
776-796
0.001
1
6mer
1888-1909
0.001
Not Conserved
ZMIZ1-AS1
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_015429.1
Biotype: lincRNA
Gene id: NR_015429.1 (gene)
Gene Name: ZMIZ1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-114
0.012
2
8mer
1722-1744
0.010
0
6mer
1987-2009
0.003
0
6mer
1025-1039
0.002
1
FLJ33534
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000536743
Biotype: lincRNA
Gene id: ENSG00000145063
Gene Name: FLJ33534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1087-1103
0.013
1
7mer
1308-1329
0.009
1
7mer
330-347
0.002
1
6mer
430-447
0.001
Not Conserved
CTD-2342N23.3
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606279
Biotype: lincRNA
Gene id: ENSG00000272456
Gene Name: CTD-2342N23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
885-909
0.015
0
7mer
63-87
0.011
1
RP11-261N11.8
hsa-miR-214-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370257
Biotype: antisense
Gene id: ENSG00000203900
Gene Name: RP11-261N11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2643-2659
0.007
2
6mer
3096-3117
0.005
2
7mer
369-392
0.005
0
6mer
2832-2856
0.003
1
7mer
1952-1966
0.003
0
6mer
1066-1083
0.002
1
7mer
1243-1266
0.001
1
RP1-153G14.4
hsa-miR-214-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607727
Biotype: lincRNA
Gene id: ENSG00000271755
Gene Name: RP1-153G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2567-2587
0.016
1
7mer
364-378
0.009
0
6mer
1419-1441
0.001
1
6mer
1407-1424
0.000
1
CTC-429C10.2
hsa-miR-214-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600329
Biotype: antisense
Gene id: ENSG00000268095
Gene Name: CTC-429C10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-479
0.017
1
6mer
445-467
0.005
2
6mer
456-475
0.004
1
XLOC_002976
hsa-miR-214-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006357
Biotype: transcript isomorph
Gene id: XLOC_002976
Gene Name: XLOC_002976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1002-1014
0.010
2
7mer
890-907
0.008
4
6mer
702-723
0.006
1
6mer
391-408
0.002
Not Conserved
ZMIZ1-AS1
hsa-miR-214-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024429.1
Biotype: lincRNA
Gene id: NR_024429.1 (gene)
Gene Name: ZMIZ1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-114
0.012
2
8mer
1722-1744
0.010
0
6mer
2083-2105
0.003
0
6mer
1025-1039
0.002
1
RP11-470L19.2
hsa-miR-214-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457402
Biotype: lincRNA
Gene id: ENSG00000235407
Gene Name: RP11-470L19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1855-1872
0.012
1
7mer
185-204
0.007
0
6mer
88-110
0.004
1
6mer
135-153
0.003
1
RP11-231E6.1
hsa-miR-214-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1299-1316
0.019
1
6mer
1503-1527
0.004
1
6mer
1111-1125
0.003
0
XLOC_009577
hsa-miR-214-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019778
Biotype: transcript isomorph
Gene id: XLOC_009577
Gene Name: XLOC_009577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3735-3752
0.009
1
7mer
1350-1372
0.008
5
6mer
7429-7451
0.004
0
6mer
4197-4207
0.001
0
6mer
4393-4414
0.001
1
6mer
2772-2798
0.001
1
6mer
5809-5826
0.001
Not Conserved
RP11-4B16.4
hsa-miR-214-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000611482
Biotype: antisense
Gene id: ENSG00000278330
Gene Name: RP11-4B16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2135-2153
0.006
2
7mer
822-844
0.005
1
6mer
2837-2850
0.004
1
7mer
2363-2379
0.004
1
6mer
2909-2916
0.003
0
6mer
2912-2921
0.003
1
CTD-2583P5.3
hsa-miR-214-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569407
Biotype: antisense
Gene id: ENSG00000261158
Gene Name: CTD-2583P5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
323-341
0.007
1
6mer
508-527
0.006
4
7mer
223-243
0.005
1
6mer
40-60
0.004
2
6mer
241-266
0.003
1
CTC-400I9.1
hsa-miR-214-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000567374
Biotype: lincRNA
Gene id: ENSG00000261316
Gene Name: CTC-400I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-128
0.013
0
7mer
121-132
0.011
3
6mer
60-79
0.002
1
TMEM51-AS1
hsa-miR-214-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000310916
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
492-516
0.005
3
6mer
2687-2703
0.005
7
7mer
697-720
0.005
2
8mer
1571-1589
0.005
1
8mer
5078-5096
0.002
1
8mer
5090-5114
0.002
1
6mer
3339-3362
0.002
Not Conserved
6mer
4882-4905
0.001
Not Conserved
RP11-219C24.10
hsa-miR-214-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432559
Biotype: lincRNA
Gene id: ENSG00000228229
Gene Name: RP11-219C24.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
341-360
0.022
3
6mer
24-50
0.004
0
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