LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
LINC01020
hsa-miR-214-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508201
Biotype: lincRNA
Gene id: ENSG00000215231
Gene Name: LINC01020
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-196
0.012
0
6mer
1660-1686
0.007
1
6mer
605-632
0.003
0
6mer
364-386
0.003
1
6mer
707-732
0.002
1
RP11-85G18.6
hsa-miR-214-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000574842
Biotype: lincRNA
Gene id: ENSG00000262412
Gene Name: RP11-85G18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
844-864
0.016
1
7mer
511-531
0.011
1
XLOC_010677
hsa-miR-214-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022074
Biotype: transcript isomorph
Gene id: XLOC_010677
Gene Name: XLOC_010677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-99
0.026
3
EPB41L4A-AS1
hsa-miR-214-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508590
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-232
0.020
0
6mer
71-90
0.006
4
AC003986.5
hsa-miR-214-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452700
Biotype: antisense
Gene id: ENSG00000229533
Gene Name: AC003986.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
941-961
0.017
6
6mer
1212-1238
0.006
6
8mer
99-119
0.004
1
RP11-271F18.4
hsa-miR-214-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000602311
Biotype: lincRNA
Gene id: ENSG00000270111
Gene Name: RP11-271F18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-411
0.023
10
6mer
177-189
0.004
1
CPEB2-AS1
hsa-miR-214-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500394
Biotype: lincRNA
Gene id: ENSG00000247624
Gene Name: CPEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-391
0.014
3
7mer
1600-1622
0.006
0
6mer
974-997
0.004
1
6mer
1505-1529
0.003
2
MIR205HG
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433108
Biotype: retained_intron
Gene id: ENSG00000230937
Gene Name: MIR205HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
938-958
0.015
4
8mer
548-568
0.009
2
6mer
1018-1033
0.002
0
C6orf164
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_026784.1
Biotype: sense
Gene id: NR_026784.1 (gene)
Gene Name: C6orf164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1089-1110
0.019
1
6mer
1059-1081
0.005
1
6mer
854-877
0.002
0
LINC00964
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1125-1149
0.015
1
6mer
3417-3444
0.006
3
6mer
3383-3408
0.004
0
8mer
1191-1211
0.002
0
FAM95B1
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592053
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
762-777
0.013
0
7mer
558-580
0.009
Not Conserved
6mer
1508-1531
0.004
Not Conserved
6mer
775-796
0.001
Not Conserved
XLOC_008349
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017697
Biotype: transcript isomorph
Gene id: XLOC_008349
Gene Name: XLOC_008349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-326
0.012
0
7mer
209-234
0.010
1
7mer
225-238
0.005
1
C14orf182
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000530176
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-480
0.020
2
6mer
86-106
0.004
1
6mer
299-324
0.003
3
RP11-109I13.2
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601195
Biotype: retained_intron
Gene id: ENSG00000235020
Gene Name: RP11-109I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-416
0.013
2
7mer
400-416
0.010
3
7mer
370-391
0.004
0
CTD-2619J13.8
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600123
Biotype: processed_transcript
Gene id: ENSG00000268230
Gene Name: CTD-2619J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1409-1433
0.008
2
6mer
1541-1567
0.007
3
6mer
353-365
0.004
3
6mer
905-928
0.003
3
6mer
145-167
0.002
0
6mer
1208-1231
0.002
1
RP11-47I22.2
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000508827
Biotype: lincRNA
Gene id: ENSG00000250548
Gene Name: RP11-47I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4089-4103
0.008
0
6mer
1601-1624
0.004
5
6mer
5026-5040
0.003
Not Conserved
6mer
998-1005
0.003
4
7mer
2251-2268
0.003
1
6mer
4284-4294
0.002
2
6mer
513-540
0.001
0
6mer
2910-2925
0.001
1
6mer
3229-3251
0.001
0
PSMG3-AS1
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457484
Biotype: lincRNA
Gene id: ENSG00000230487
Gene Name: PSMG3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3414-3434
0.006
0
7mer
1305-1324
0.003
Not Conserved
6mer
816-830
0.003
1
6mer
152-168
0.003
1
7mer
2812-2830
0.003
0
6mer
523-538
0.002
0
6mer
608-619
0.002
0
6mer
684-708
0.002
Not Conserved
6mer
3058-3084
0.002
0
7mer
1311-1335
0.001
0
6mer
1317-1338
0.000
0
FLJ33534
hsa-miR-214-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590207
Biotype: lincRNA
Gene id: ENSG00000145063
Gene Name: FLJ33534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-306
0.015
1
7mer
528-549
0.010
1
6mer
123-139
0.002
Not Conserved
ADIRF-AS1
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418273
Biotype: antisense
Gene id: ENSG00000272734
Gene Name: ADIRF-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1933-1949
0.007
1
7mer
252-267
0.006
Not Conserved
7mer
824-842
0.004
1
8mer
896-918
0.004
0
8mer
1899-1920
0.003
Not Conserved
6mer
821-842
0.002
1
C20orf203
hsa-miR-214-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000608990
Biotype: lincRNA
Gene id: ENSG00000198547
Gene Name: C20orf203
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
962-985
0.005
2
7mer
260-281
0.004
0
6mer
264-281
0.004
1
7mer
1896-1913
0.003
3
7mer
4114-4129
0.002
3
7mer
3140-3154
0.002
1
6mer
563-584
0.002
1
6mer
3638-3656
0.001
1
6mer
2830-2852
0.001
0
7mer
1834-1849
0.001
0
6mer
3072-3095
0.001
1
6mer
1831-1849
0.000
0
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