LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
LOC642846
hsa-miR-214-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024374.1
Biotype: lincRNA
Gene id: NR_024374.1 (gene)
Gene Name: LOC642846
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-568
0.009
2
8mer
2464-2490
0.005
6
7mer
3315-3334
0.004
1
6mer
106-133
0.002
0
6mer
1337-1357
0.002
7
6mer
1238-1261
0.001
2
6mer
2191-2215
0.001
8
6mer
1484-1507
0.001
1
6mer
2127-2140
0.001
0
RP11-750H9.5
hsa-miR-214-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527426
Biotype: antisense
Gene id: ENSG00000255197
Gene Name: RP11-750H9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-653
0.014
0
7mer
597-612
0.007
0
6mer
152-179
0.004
1
6mer
550-570
0.002
1
XLOC_010312
hsa-miR-214-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022143
Biotype: transcript isomorph
Gene id: XLOC_010312
Gene Name: XLOC_010312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-346
0.018
2
7mer
175-180
0.008
0
RP3-368B9.2
hsa-miR-214-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505702
Biotype: lincRNA
Gene id: ENSG00000250681
Gene Name: RP3-368B9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-32
0.012
1
6mer
65-91
0.007
1
6mer
9-35
0.007
1
SNHG16
hsa-miR-214-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000448136
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3142-3166
0.014
1
6mer
3525-3540
0.005
1
6mer
3440-3458
0.004
1
6mer
2822-2846
0.003
1
6mer
1410-1426
0.001
1
RP11-63M22.1
hsa-miR-214-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565082
Biotype: lincRNA
Gene id: ENSG00000260558
Gene Name: RP11-63M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-520
0.027
1
RP5-1061H20.5
hsa-miR-214-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430677
Biotype: antisense
Gene id: ENSG00000233920
Gene Name: RP5-1061H20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
408-423
0.017
2
7mer
643-669
0.006
0
6mer
687-705
0.004
0
LOC388692
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7298-7322
0.007
1
7mer
170-193
0.007
0
7mer
11126-11148
0.006
0
7mer
9267-9282
0.004
1
6mer
2231-2254
0.002
1
6mer
2351-2371
0.001
1
SDCBP2-AS1
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000446423
Biotype: antisense
Gene id: ENSG00000234684
Gene Name: SDCBP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1676-1703
0.022
1
6mer
1780-1801
0.004
3
TMEM191C
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000456153
Biotype: retained_intron
Gene id: ENSG00000206140
Gene Name: TMEM191C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
78-94
0.009
7
6mer
72-91
0.006
3
8mer
364-383
0.004
0
6mer
1263-1287
0.003
1
6mer
1224-1238
0.003
1
6mer
1351-1376
0.002
2
EPB41L4A-AS1
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000427306
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1298-1316
0.018
0
6mer
780-799
0.004
4
6mer
1179-1185
0.004
0
RP11-732A19.9
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000545572
Biotype: antisense
Gene id: ENSG00000255680
Gene Name: RP11-732A19.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-53
0.020
8
7mer
102-123
0.006
3
TMEM72-AS1
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450287
Biotype: antisense
Gene id: ENSG00000224812
Gene Name: TMEM72-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-346
0.009
1
6mer
146-163
0.007
3
6mer
351-362
0.003
2
6mer
322-346
0.002
1
6mer
2365-2388
0.002
1
6mer
2594-2615
0.002
1
6mer
1198-1223
0.001
1
LINC01106
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027244.1
Biotype: lincRNA
Gene id: NR_027244.1 (gene)
Gene Name: LINC01106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1017-1035
0.014
1
8mer
1647-1661
0.010
1
6mer
1301-1317
0.003
1
XLOC_009855
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020235
Biotype: transcript isomorph
Gene id: XLOC_009855
Gene Name: XLOC_009855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
978-999
0.027
1
LINC00870
hsa-miR-214-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473713
Biotype: lincRNA
Gene id: ENSG00000243083
Gene Name: LINC00870
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2563-2585
0.017
1
6mer
2051-2069
0.004
2
6mer
580-602
0.003
3
6mer
1639-1654
0.002
1
RP11-25E2.1
hsa-miR-214-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548488
Biotype: lincRNA
Gene id: ENSG00000257958
Gene Name: RP11-25E2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1357-1381
0.011
0
7mer
570-594
0.008
5
7mer
649-673
0.006
2
6mer
280-294
0.003
Not Conserved
XLOC_005141
hsa-miR-214-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011659
Biotype: transcript isomorph
Gene id: XLOC_005141
Gene Name: XLOC_005141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-50
0.015
0
7mer
1873-1889
0.010
Not Conserved
6mer
1954-1978
0.002
Not Conserved
XLOC_006242
hsa-miR-214-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
521-540
0.014
1
7mer
1053-1070
0.012
1
RP11-58E21.5
hsa-miR-214-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000603228
Biotype: lincRNA
Gene id: ENSG00000273065
Gene Name: RP11-58E21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-123
0.018
1
7mer
357-369
0.008
0
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