LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-474N24.6
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609787
Biotype: lincRNA
Gene id: ENSG00000272799
Gene Name: RP11-474N24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-450
0.020
1
6mer
10-36
0.007
1
RP11-678G15.1
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584036
Biotype: sense_intronic
Gene id: ENSG00000264596
Gene Name: RP11-678G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1092-1118
0.019
0
9mer
137-153
0.006
1
6mer
65-90
0.002
1
STAG3L5P-PVRIG2P-PILRB
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036570.1
Biotype: sense
Gene id: NR_036570.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2989-3003
0.006
0
6mer
1369-1395
0.003
4
6mer
956-973
0.003
2
7mer
2470-2490
0.003
0
7mer
2096-2116
0.002
1
7mer
2091-2107
0.002
1
7mer
1547-1574
0.002
0
7mer
2076-2095
0.002
1
6mer
1077-1093
0.001
2
6mer
1694-1716
0.001
1
6mer
2028-2046
0.001
1
6mer
2076-2098
0.001
2
MED4-AS1
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422483
Biotype: antisense
Gene id: ENSG00000229111
Gene Name: MED4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-411
0.027
7
XLOC_013694
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028346
Biotype: transcript isomorph
Gene id: XLOC_013694
Gene Name: XLOC_013694
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
814-832
0.020
2
7mer
797-816
0.007
0
CTB-119C2.1
hsa-miR-214-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608362
Biotype: antisense
Gene id: ENSG00000273237
Gene Name: CTB-119C2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-294
0.019
0
6mer
335-354
0.004
0
6mer
1105-1119
0.004
1
FAM95B1
hsa-miR-214-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610972
Biotype: lincRNA
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
763-778
0.014
0
7mer
559-581
0.009
Not Conserved
6mer
1509-1532
0.004
Not Conserved
6mer
776-797
0.001
Not Conserved
AC007796.1
hsa-miR-214-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585336
Biotype: antisense
Gene id: ENSG00000267662
Gene Name: AC007796.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-388
0.017
1
7mer
383-403
0.010
3
XLOC_009261
hsa-miR-214-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019452
Biotype: transcript isomorph
Gene id: XLOC_009261
Gene Name: XLOC_009261
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-353
0.021
4
6mer
347-363
0.006
3
KIF9-AS1
hsa-miR-214-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033373.1
Biotype: antisense
Gene id: NR_033373.1 (gene)
Gene Name: KIF9-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2093-2108
0.010
1
7mer
2158-2171
0.007
0
6mer
1991-2004
0.004
3
6mer
1624-1644
0.004
7
6mer
2417-2441
0.002
0
XLOC_005214
hsa-miR-214-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011750
Biotype: transcript isomorph
Gene id: XLOC_005214
Gene Name: XLOC_005214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-295
0.009
0
7mer
1700-1713
0.009
0
6mer
564-589
0.005
1
7mer
1650-1659
0.004
0
FLJ33534
hsa-miR-214-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000544306
Biotype: lincRNA
Gene id: ENSG00000145063
Gene Name: FLJ33534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
857-873
0.014
1
7mer
980-1001
0.010
1
7mer
330-347
0.003
1
FTX
hsa-miR-214-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602812
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2248-2266
0.011
1
9mer
2270-2287
0.008
2
6mer
2098-2110
0.004
0
6mer
2245-2266
0.004
4
HAND2-AS1
hsa-miR-214-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2877-2904
0.012
3
7mer
746-757
0.007
5
6mer
510-535
0.007
6
6mer
622-645
0.001
0
AP001055.6
hsa-miR-214-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411694
Biotype: lincRNA
Gene id: ENSG00000225331
Gene Name: AP001055.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
692-710
0.012
1
6mer
553-570
0.007
1
7mer
473-491
0.006
0
6mer
470-483
0.002
0
GLG1
hsa-miR-214-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566788
Biotype: lincRNA
Gene id: ENSG00000260539
Gene Name: GLG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
111-133
0.014
11
6mer
257-278
0.005
6
6mer
2216-2243
0.003
1
6mer
540-547
0.002
0
6mer
943-959
0.002
1
6mer
1636-1654
0.001
1
XLOC_008535
hsa-miR-214-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018255
Biotype: transcript isomorph
Gene id: XLOC_008535
Gene Name: XLOC_008535
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2029-2049
0.008
0
7mer
789-808
0.004
1
6mer
1888-1908
0.003
0
6mer
144-160
0.003
1
7mer
857-876
0.003
0
7mer
989-1010
0.003
1
6mer
2925-2939
0.003
Not Conserved
DNAH17-AS1
hsa-miR-214-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000598378
Biotype: retained_intron
Gene id: ENSG00000267432
Gene Name: DNAH17-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4286-4311
0.023
2
6mer
1208-1230
0.001
2
7mer
3089-3107
0.001
0
7mer
2967-2980
0.001
Not Conserved
6mer
1344-1370
0.001
1
TMEM191C
hsa-miR-214-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449424
Biotype: lincRNA
Gene id: ENSG00000206140
Gene Name: TMEM191C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
79-95
0.009
7
6mer
2124-2150
0.005
2
6mer
73-92
0.005
3
8mer
204-230
0.004
0
6mer
959-973
0.002
1
6mer
998-1022
0.001
1
6mer
1086-1111
0.001
2
RP11-496D24.2
hsa-miR-214-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569621
Biotype: lincRNA
Gene id: ENSG00000261121
Gene Name: RP11-496D24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-96
0.017
0
6mer
340-358
0.005
3
6mer
378-394
0.002
1
6mer
43-70
0.002
Not Conserved
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