LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
CTC-205M6.5
hsa-miR-214-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562870
Biotype: sense_overlapping
Gene id: ENSG00000260841
Gene Name: CTC-205M6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2241-2261
0.023
1
6mer
548-570
0.005
2
LOC283045
hsa-miR-214-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_104162.1
Biotype: antisense
Gene id: NR_104162.1 (gene)
Gene Name: LOC283045
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-157
0.023
0
6mer
1094-1121
0.003
0
6mer
1287-1305
0.002
0
XLOC_005041
hsa-miR-214-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010522
Biotype: transcript isomorph
Gene id: XLOC_005041
Gene Name: XLOC_005041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-349
0.011
1
7mer
788-793
0.007
1
6mer
2591-2615
0.004
1
6mer
2926-2945
0.003
3
7mer
2538-2561
0.002
1
LINC00087
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433425
Biotype: lincRNA
Gene id: ENSG00000196972
Gene Name: LINC00087
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
760-774
0.008
3
8mer
237-263
0.007
0
7mer
262-280
0.006
1
7mer
350-375
0.004
0
6mer
2130-2150
0.002
0
RP11-797H7.5
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340779
Biotype: antisense
Gene id: ENSG00000189316
Gene Name: RP11-797H7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-105
0.027
1
C11orf72
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000333139
Biotype: lincRNA
Gene id: ENSG00000184224
Gene Name: C11orf72
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-326
0.014
0
6mer
2352-2371
0.005
4
6mer
3-29
0.004
0
7mer
2288-2304
0.003
0
6mer
1280-1300
0.001
Not Conserved
RP11-214K3.24
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621669
Biotype: lincRNA
Gene id: ENSG00000275389
Gene Name: RP11-214K3.24
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-575
0.007
1
7mer
507-528
0.007
1
6mer
2426-2448
0.006
2
7mer
2030-2042
0.005
1
6mer
2249-2273
0.003
2
P2RX5-TAX1BP3
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037928.1
Biotype: sense
Gene id: NR_037928.1 (gene)
Gene Name: P2RX5-TAX1BP3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1033-1054
0.010
6
9mer
5791-5801
0.005
1
7mer
577-595
0.004
3
6mer
771-792
0.002
4
6mer
5691-5708
0.002
3
7mer
605-627
0.002
0
6mer
5780-5798
0.001
3
6mer
4736-4752
0.001
0
LINC00964
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510897
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1078-1102
0.016
1
6mer
3370-3397
0.006
3
6mer
3336-3361
0.004
0
8mer
1144-1164
0.002
0
CTD-2553C6.1
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592332
Biotype: antisense
Gene id: ENSG00000267650
Gene Name: CTD-2553C6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-474
0.027
5
LINC00558
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000569422
Biotype: lincRNA
Gene id: ENSG00000261517
Gene Name: LINC00558
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
885-901
0.014
1
8mer
919-935
0.008
1
8mer
947-969
0.005
1
CTC-457E21.1
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562262
Biotype: sense_intronic
Gene id: ENSG00000260599
Gene Name: CTC-457E21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
205-229
0.011
4
7mer
307-322
0.006
0
6mer
346-371
0.002
0
6mer
2825-2843
0.002
0
6mer
388-404
0.002
0
6mer
939-952
0.002
0
6mer
1548-1572
0.002
0
GUSBP11
hsa-miR-214-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000452737
Biotype: processed_transcript
Gene id: ENSG00000228315
Gene Name: GUSBP11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
728-750
0.009
1
7mer
1336-1356
0.006
0
6mer
1553-1571
0.005
2
7mer
1592-1615
0.005
0
7mer
1255-1272
0.002
Not Conserved
RP11-89C3.4
hsa-miR-214-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000603154
Biotype: lincRNA
Gene id: ENSG00000271584
Gene Name: RP11-89C3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-212
0.027
0
AC010127.3
hsa-miR-214-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597623
Biotype: antisense
Gene id: ENSG00000236107
Gene Name: AC010127.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
590-608
0.011
1
6mer
519-537
0.010
11
6mer
261-283
0.006
3
ZNF213-AS1
hsa-miR-214-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576490
Biotype: antisense
Gene id: ENSG00000263072
Gene Name: ZNF213-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-91
0.023
1
6mer
456-472
0.004
4
TMEM256-PLSCR3
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037719.1
Biotype: sense
Gene id: NR_037719.1 (gene)
Gene Name: TMEM256-PLSCR3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
110-131
0.007
5
7mer
1812-1838
0.005
1
7mer
913-934
0.004
6
6mer
1171-1192
0.004
9
6mer
735-752
0.003
7
6mer
1060-1082
0.002
9
6mer
1155-1176
0.002
9
AC090957.2
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000422657
Biotype: antisense
Gene id: ENSG00000230172
Gene Name: AC090957.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-55
0.011
0
8mer
334-354
0.010
0
6mer
198-219
0.003
0
6mer
201-219
0.003
0
RP11-927P21.1
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577938
Biotype: antisense
Gene id: ENSG00000265218
Gene Name: RP11-927P21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-449
0.010
3
7mer
258-278
0.008
3
6mer
130-148
0.004
0
6mer
318-335
0.003
0
6mer
317-332
0.002
0
AC093642.4
hsa-miR-214-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412193
Biotype: lincRNA
Gene id: ENSG00000226423
Gene Name: AC093642.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-504
0.027
0
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