LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-145G20.1
hsa-miR-214-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000522173
Biotype: lincRNA
Gene id: ENSG00000248510
Gene Name: RP11-145G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-150
0.027
0
RP11-849F2.4
hsa-miR-214-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585275
Biotype: lincRNA
Gene id: ENSG00000266279
Gene Name: RP11-849F2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-303
0.027
Not Conserved
RP11-16E12.2
hsa-miR-214-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558109
Biotype: lincRNA
Gene id: ENSG00000259772
Gene Name: RP11-16E12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
401-406
0.011
1
7mer
537-559
0.009
1
6mer
139-165
0.004
1
6mer
296-323
0.004
1
RP11-25I9.3
hsa-miR-214-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000615020
Biotype: lincRNA
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1198-1218
0.012
2
6mer
814-830
0.004
4
6mer
1782-1808
0.004
2
6mer
1851-1864
0.003
4
6mer
667-688
0.002
3
6mer
872-890
0.001
1
RP11-85B7.2
hsa-miR-214-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574307
Biotype: antisense
Gene id: ENSG00000262966
Gene Name: RP11-85B7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-511
0.009
2
8mer
4081-4098
0.008
0
7mer
2167-2189
0.003
1
8mer+wobble
4882-4896
0.002
0
7mer
3174-3186
0.002
0
7mer
1812-1837
0.002
1
7mer
1186-1203
0.001
1
6mer
3033-3055
0.001
1
6mer
3118-3129
0.000
0
PCAT19
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594315
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
950-968
0.014
0
6mer
954-969
0.007
0
6mer
519-543
0.007
0
RP11-34F13.2
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000502156
Biotype: lincRNA
Gene id: ENSG00000245719
Gene Name: RP11-34F13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
137-163
0.017
11
8mer
1531-1550
0.007
1
6mer
393-410
0.003
3
6mer
1253-1272
0.001
0
LINC00698
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475886
Biotype: lincRNA
Gene id: ENSG00000244342
Gene Name: LINC00698
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-418
0.024
5
6mer
192-207
0.004
1
DDX39B-AS1
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420520
Biotype: antisense
Gene id: ENSG00000234006
Gene Name: DDX39B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-497
0.027
1
XLOC_002612
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005982
Biotype: transcript isomorph
Gene id: XLOC_002612
Gene Name: XLOC_002612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
986-1005
0.023
3
6mer
1985-2007
0.004
1
AC018647.3
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000432866
Biotype: lincRNA
Gene id: ENSG00000227544
Gene Name: AC018647.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-329
0.018
6
6mer
454-467
0.010
7
RP11-495P10.8
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
514-533
0.015
0
6mer
466-493
0.012
0
LINC-PINT
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_015431.1
Biotype: lincRNA
Gene id: NR_015431.1 (gene)
Gene Name: LINC-PINT
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2353-2370
0.009
4
7mer
2349-2367
0.005
5
6mer
2338-2355
0.004
10
6mer
2465-2478
0.004
5
6mer
1091-1097
0.003
1
6mer
936-955
0.002
1
XLOC_003061
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007127
Biotype: transcript isomorph
Gene id: XLOC_003061
Gene Name: XLOC_003061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6305-6327
0.009
1
8mer
5649-5673
0.009
0
6mer
106-131
0.004
0
6mer
6645-6671
0.003
1
6mer
2484-2503
0.001
2
XLOC_007892
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016503
Biotype: transcript isomorph
Gene id: XLOC_007892
Gene Name: XLOC_007892
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-465
0.012
Not Conserved
7mer
212-232
0.008
Not Conserved
7mer
459-482
0.005
Not Conserved
6mer
356-367
0.003
Not Conserved
RP11-843B15.2
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551974
Biotype: antisense
Gene id: ENSG00000257530
Gene Name: RP11-843B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
358-385
0.017
4
6mer
202-224
0.010
5
RP11-15H20.6
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599922
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
525-548
0.027
1
PSMG3-AS1
hsa-miR-214-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437621
Biotype: lincRNA
Gene id: ENSG00000230487
Gene Name: PSMG3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5271-5291
0.005
0
7mer
959-978
0.004
Not Conserved
6mer
470-484
0.004
1
6mer
168-184
0.003
1
6mer
370-381
0.002
0
7mer
4669-4687
0.002
0
7mer
965-989
0.002
0
6mer
285-300
0.002
0
6mer
4915-4941
0.001
0
6mer
3592-3614
0.001
1
6mer
971-992
0.001
0
PPP3CB-AS1
hsa-miR-214-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000596320
Biotype: antisense
Gene id: ENSG00000221817
Gene Name: PPP3CB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
686-704
0.025
10
6mer
351-375
0.002
Not Conserved
AC011897.2
hsa-miR-214-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450715
Biotype: lincRNA
Gene id: ENSG00000228505
Gene Name: AC011897.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-74
0.027
0
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