LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-641D5.2
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000480669
Biotype: antisense
Gene id: ENSG00000241479
Gene Name: RP11-641D5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-470
0.028
4
RP1-136B1.1
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606542
Biotype: lincRNA
Gene id: ENSG00000272465
Gene Name: RP1-136B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-310
0.021
3
6mer
85-98
0.007
2
DLEU7-AS1
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413510
Biotype: antisense
Gene id: ENSG00000237152
Gene Name: DLEU7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-237
0.009
1
6mer
48-70
0.007
2
7mer
293-310
0.006
1
6mer
218-233
0.004
1
6mer
293-306
0.002
1
RP11-94L15.2
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-93
0.024
4
6mer
1040-1062
0.001
0
6mer
4563-4590
0.001
1
6mer
4468-4484
0.000
2
LINC00535
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520096
Biotype: antisense
Gene id: ENSG00000246662
Gene Name: LINC00535
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
518-530
0.028
8
XLOC_001265
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001882
Biotype: transcript isomorph
Gene id: XLOC_001265
Gene Name: XLOC_001265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7770-7785
0.009
6
7mer
7317-7343
0.005
0
6mer
580-604
0.003
1
6mer
3252-3267
0.003
5
6mer
3830-3854
0.002
1
7mer
5894-5917
0.002
1
6mer
1269-1292
0.002
0
6mer
6034-6052
0.002
3
7mer
3215-3234
0.001
1
RP4-734G22.3
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
378-404
0.010
13
6mer
7389-7413
0.005
9
7mer
5110-5131
0.003
7
7mer
4639-4657
0.002
6
7mer
2551-2577
0.002
1
6mer
7141-7163
0.002
2
6mer
5358-5373
0.001
0
9mer
5960-5984
0.001
1
9mer
3188-3211
0.001
0
6mer
3097-3118
0.001
1
AC016768.1
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432612
Biotype: lincRNA
Gene id: ENSG00000232451
Gene Name: AC016768.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-169
0.023
3
6mer
88-106
0.004
1
NUTM2B-AS1
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000495430
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-427
0.019
1
7mer
411-420
0.007
0
6mer
714-732
0.002
0
XLOC_002872
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006268
Biotype: transcript isomorph
Gene id: XLOC_002872
Gene Name: XLOC_002872
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1089-1111
0.019
2
6mer
565-580
0.005
3
6mer
6-29
0.003
1
XLOC_006493
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013861
Biotype: transcript isomorph
Gene id: XLOC_006493
Gene Name: XLOC_006493
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-195
0.018
1
9mer
758-779
0.004
2
6mer
675-696
0.003
4
6mer
690-712
0.003
4
RP11-747H7.3
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565058
Biotype: sense_intronic
Gene id: ENSG00000260711
Gene Name: RP11-747H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-616
0.008
Not Conserved
8mer
231-250
0.007
0
6mer
488-496
0.004
1
6mer
6427-6440
0.003
1
6mer
4119-4139
0.003
2
6mer
2366-2388
0.003
2
LINC01020
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509382
Biotype: lincRNA
Gene id: ENSG00000215231
Gene Name: LINC01020
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-92
0.013
0
6mer
554-579
0.007
1
6mer
452-479
0.005
0
6mer
211-233
0.003
1
DKFZP434L187
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000455163
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
95-110
0.017
1
7mer
145-163
0.011
Not Conserved
RP11-37B2.1
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504145
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
519-546
0.020
0
8mer
1354-1370
0.005
0
7mer
387-412
0.003
1
TTC28-AS1
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430525
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-264
0.010
1
6mer
458-479
0.007
9
6mer
314-330
0.007
10
6mer
315-338
0.004
8
RP11-466A19.1
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581360
Biotype: antisense
Gene id: ENSG00000266718
Gene Name: RP11-466A19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-75
0.010
0
6mer
126-146
0.004
Not Conserved
6mer
121-143
0.004
0
6mer
392-416
0.003
1
6mer
908-921
0.003
1
7mer
1022-1042
0.002
1
LINC00698
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497573
Biotype: lincRNA
Gene id: ENSG00000244342
Gene Name: LINC00698
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-364
0.023
5
6mer
201-220
0.004
1
RP11-669N7.2
hsa-miR-214-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000512133
Biotype: retained_intron
Gene id: ENSG00000249196
Gene Name: RP11-669N7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2137-2155
0.015
0
7mer
1731-1755
0.004
0
6mer
261-280
0.004
0
6mer
636-657
0.003
0
6mer
342-363
0.002
0
LOC100507443
hsa-miR-214-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038437.1
Biotype: antisense
Gene id: NR_038437.1 (gene)
Gene Name: LOC100507443
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-328
0.010
0
6mer
30-52
0.010
3
7mer
148-170
0.008
1
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