LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP5-827E24.1
hsa-miR-214-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620506
Biotype: lincRNA
Gene id: ENSG00000277270
Gene Name: RP5-827E24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-234
0.014
1
7mer
70-85
0.008
1
7mer
80-106
0.006
0
MKLN1-AS
hsa-miR-214-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000444245
Biotype: antisense
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-29
0.024
1
6mer
175-201
0.003
1
RP11-344E13.3
hsa-miR-214-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433763
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
629-646
0.028
0
LINC00689
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447563
Biotype: lincRNA
Gene id: ENSG00000231419
Gene Name: LINC00689
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-64
0.007
0
7mer
3437-3442
0.006
1
7mer
2276-2291
0.005
0
7mer
304-320
0.003
1
7mer
140-155
0.002
Not Conserved
6mer
3553-3568
0.002
0
6mer
1140-1162
0.002
1
6mer
1571-1590
0.001
Not Conserved
6mer
1637-1656
0.000
0
XXbac-BPG154L12.4
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425033
Biotype: antisense
Gene id: ENSG00000225914
Gene Name: XXbac-BPG154L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
178-203
0.015
1
6mer
2701-2722
0.005
0
7mer
778-803
0.004
Not Conserved
6mer
1334-1350
0.003
0
XLOC_004260
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009848
Biotype: transcript isomorph
Gene id: XLOC_004260
Gene Name: XLOC_004260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1591-1615
0.011
1
7mer
2074-2088
0.010
0
7mer
495-514
0.003
1
6mer
1069-1095
0.002
1
6mer
1689-1703
0.002
0
AC007326.10
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624224
Biotype: lincRNA
Gene id: ENSG00000280418
Gene Name: AC007326.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
703-727
0.006
0
8mer
524-541
0.004
1
6mer
7135-7152
0.003
Not Conserved
7mer
992-1013
0.002
0
6mer
658-682
0.002
2
7mer
2319-2342
0.002
0
6mer
2665-2690
0.002
4
6mer
4436-4457
0.002
1
6mer
1659-1684
0.001
2
6mer
1200-1215
0.001
0
6mer
4304-4326
0.001
Not Conserved
6mer
6020-6042
0.001
0
6mer
677-699
0.001
Not Conserved
6mer
1713-1737
0.001
0
6mer
4294-4309
0.000
0
CTC-523E23.5
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600348
Biotype: lincRNA
Gene id: ENSG00000269086
Gene Name: CTC-523E23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-206
0.022
2
7mer
876-898
0.005
1
LINC00635
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466155
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-111
0.023
2
6mer
309-320
0.003
1
6mer
348-368
0.002
Not Conserved
RP3-462E2.3
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551450
Biotype: lincRNA
Gene id: ENSG00000257877
Gene Name: RP3-462E2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-174
0.028
0
XLOC_005921
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012361
Biotype: transcript isomorph
Gene id: XLOC_005921
Gene Name: XLOC_005921
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-866
0.011
1
7mer
5331-5348
0.006
0
7mer
1137-1158
0.002
0
7mer
3692-3708
0.002
1
6mer
4955-4972
0.002
0
6mer
1223-1235
0.002
1
6mer
4952-4967
0.001
Not Conserved
6mer
1792-1812
0.001
Not Conserved
6mer
2474-2493
0.001
0
6mer
1610-1631
0.000
Not Conserved
XLOC_008618
hsa-miR-214-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017678
Biotype: transcript isomorph
Gene id: XLOC_008618
Gene Name: XLOC_008618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1347-1366
0.009
4
9mer
2825-2836
0.005
1
8mer
2639-2657
0.004
0
7mer
2381-2400
0.003
0
7mer
2079-2097
0.003
0
8mer
2031-2049
0.002
Not Conserved
7mer
1744-1766
0.002
0
AC016747.3
hsa-miR-214-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417691
Biotype: retained_intron
Gene id: ENSG00000212978
Gene Name: AC016747.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
826-847
0.028
2
LINC01140
hsa-miR-214-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461990
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-303
0.015
2
7mer
619-643
0.011
5
6mer
2258-2284
0.002
1
PPP3CB-AS1
hsa-miR-214-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597958
Biotype: antisense
Gene id: ENSG00000221817
Gene Name: PPP3CB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
725-745
0.011
8
6mer
725-748
0.009
10
7mer
705-731
0.005
3
6mer
216-240
0.002
Not Conserved
LINC00654
hsa-miR-214-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000379053
Biotype: lincRNA
Gene id: ENSG00000205181
Gene Name: LINC00654
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3497-3518
0.005
1
6mer
5631-5649
0.005
2
7mer
1337-1352
0.004
1
7mer
3074-3094
0.003
Not Conserved
6mer
469-485
0.003
1
6mer
2071-2076
0.002
1
6mer
3272-3293
0.002
0
6mer
1619-1632
0.001
2
7mer
5167-5189
0.001
Not Conserved
7mer
3211-3227
0.001
1
6mer
5086-5100
0.001
1
AC110781.3
hsa-miR-214-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000480694
Biotype: antisense
Gene id: ENSG00000176349
Gene Name: AC110781.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1579-1596
0.006
0
7mer
590-599
0.005
1
7mer
1661-1676
0.005
5
8mer
2705-2730
0.004
1
6mer
4118-4129
0.003
1
6mer
1350-1375
0.002
2
7mer
876-892
0.002
0
6mer
3718-3744
0.002
0
XLOC_011494
hsa-miR-214-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
56-78
0.028
1
RP11-3D4.2
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560268
Biotype: antisense
Gene id: ENSG00000259287
Gene Name: RP11-3D4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-83
0.018
4
6mer
323-350
0.005
4
6mer
62-76
0.004
3
C10orf85
hsa-miR-214-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000623529
Biotype: lincRNA
Gene id: ENSG00000177234
Gene Name: C10orf85
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1966-1981
0.016
2
7mer
635-660
0.009
1
6mer
260-279
0.002
0
6mer
1110-1130
0.001
0
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