LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RBAKDN
hsa-miR-214-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000498308
Biotype: lincRNA
Gene id: ENSG00000273313
Gene Name: RBAKDN
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
100-117
0.008
5
6mer
100-120
0.007
4
6mer
106-123
0.007
5
6mer
106-126
0.006
5
LOC646471
hsa-miR-214-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_024498.1
Biotype: antisense
Gene id: NR_024498.1 (gene)
Gene Name: LOC646471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3482-3503
0.017
4
6mer
3479-3487
0.008
6
6mer
669-689
0.003
1
6mer
2393-2412
0.001
0
CTD-2001C12.1
hsa-miR-214-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499025
Biotype: lincRNA
Gene id: ENSG00000247877
Gene Name: CTD-2001C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-321
0.024
0
6mer
1133-1158
0.004
0
XLOC_008883
hsa-miR-214-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
412-431
0.015
1
8mer
619-642
0.007
0
6mer
337-360
0.003
1
6mer
329-351
0.003
1
AC007391.2
hsa-miR-214-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433893
Biotype: lincRNA
Gene id: ENSG00000232028
Gene Name: AC007391.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-289
0.015
2
7mer
329-354
0.014
1
XLOC_005461
hsa-miR-214-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011948
Biotype: transcript isomorph
Gene id: XLOC_005461
Gene Name: XLOC_005461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-163
0.023
4
6mer
117-121
0.005
0
AC109826.1
hsa-miR-214-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000624259
Biotype: lincRNA
Gene id: ENSG00000226791
Gene Name: AC109826.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-282
0.017
1
7mer
423-446
0.011
1
AC012309.5
hsa-miR-214-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000438770
Biotype: lincRNA
Gene id: ENSG00000226686
Gene Name: AC012309.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-478
0.018
0
7mer
522-542
0.011
0
FAM95C
hsa-miR-214-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_047651.1
Biotype: sense
Gene id: NR_047651.1 (gene)
Gene Name: FAM95C
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-208
0.010
0
7mer
1404-1426
0.007
0
6mer
6-31
0.007
0
6mer
1119-1141
0.005
1
XLOC_013553
hsa-miR-214-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
386-410
0.014
1
6mer
747-771
0.004
1
7mer
2915-2939
0.003
0
6mer
2809-2813
0.002
0
7mer
2980-2992
0.002
0
7mer
3025-3046
0.001
0
6mer
3014-3039
0.001
0
6mer
3025-3042
0.001
0
LINC00654
hsa-miR-214-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_015406.1
Biotype: lincRNA
Gene id: NR_015406.1 (gene)
Gene Name: LINC00654
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
569-589
0.007
Not Conserved
7mer
992-1013
0.007
1
6mer
3126-3144
0.005
2
7mer
706-722
0.003
1
6mer
767-788
0.003
0
7mer
2662-2684
0.001
Not Conserved
6mer
2581-2595
0.001
1
XLOC_012529
hsa-miR-214-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025701
Biotype: transcript isomorph
Gene id: XLOC_012529
Gene Name: XLOC_012529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5773-5790
0.020
0
6mer
5737-5764
0.005
1
6mer
457-470
0.002
Not Conserved
6mer
2904-2918
0.001
0
RP11-103J17.1
hsa-miR-214-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501725
Biotype: lincRNA
Gene id: ENSG00000247810
Gene Name: RP11-103J17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-77
0.014
4
7mer
51-69
0.009
0
6mer
296-315
0.006
1
NDUFA6-AS1
hsa-miR-214-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000439129
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2370-2384
0.005
2
7mer
778-795
0.004
1
7mer
1827-1844
0.003
1
6mer
1321-1335
0.003
3
6mer
688-708
0.003
3
6mer
2643-2657
0.002
0
6mer
2152-2169
0.002
2
6mer
1737-1757
0.001
3
6mer
1103-1120
0.001
2
6mer
1594-1608
0.001
0
RP1-283E3.8
hsa-miR-214-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598846
Biotype: processed_transcript
Gene id: ENSG00000268575
Gene Name: RP1-283E3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
801-821
0.006
5
8mer
1563-1569
0.005
4
7mer
4513-4528
0.003
0
6mer
665-686
0.003
4
7mer
3324-3349
0.002
Not Conserved
6mer
4547-4568
0.002
2
6mer
2533-2550
0.002
5
6mer
867-884
0.002
4
7mer
3269-3290
0.002
0
6mer
798-806
0.001
3
CTD-2515H24.2
hsa-miR-214-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621477
Biotype: lincRNA
Gene id: ENSG00000276772
Gene Name: CTD-2515H24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1425-1449
0.008
1
7mer
434-454
0.005
0
6mer
1199-1222
0.004
2
7mer
717-741
0.003
1
7mer
589-612
0.003
1
6mer
955-981
0.002
0
6mer
452-477
0.002
3
UNQ6494
hsa-miR-214-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000617436
Biotype: lincRNA
Gene id: ENSG00000237372
Gene Name: UNQ6494
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
433-450
0.009
3
8mer
555-576
0.006
1
6mer
1205-1219
0.004
3
7mer
497-520
0.003
1
6mer
633-646
0.002
0
6mer
662-687
0.002
0
6mer
632-649
0.001
0
6mer
686-711
0.001
0
RP11-344E13.3
hsa-miR-214-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582324
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
183-203
0.014
0
6mer
295-321
0.014
0
RP11-513G19.1
hsa-miR-214-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535324
Biotype: antisense
Gene id: ENSG00000255968
Gene Name: RP11-513G19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-410
0.028
6
RP11-114G22.1
hsa-miR-214-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540895
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1744-1760
0.018
0
6mer
1853-1875
0.006
0
6mer
1558-1577
0.004
0
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