LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-111E14.1
hsa-miR-214-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558050
Biotype: antisense
Gene id: ENSG00000259351
Gene Name: RP11-111E14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
996-1020
0.021
1
6mer
46-66
0.005
4
6mer
112-124
0.003
0
XLOC_009222
hsa-miR-214-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4868-4892
0.011
0
6mer
725-751
0.009
0
6mer
3432-3459
0.006
0
6mer
4896-4919
0.003
0
AC010969.1
hsa-miR-214-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000340444
Biotype: antisense
Gene id: ENSG00000188525
Gene Name: AC010969.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-89
0.022
2
6mer
2294-2318
0.005
0
6mer
1434-1453
0.002
0
XLOC_006625
hsa-miR-214-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013982
Biotype: transcript isomorph
Gene id: XLOC_006625
Gene Name: XLOC_006625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-93
0.012
1
8mer
1185-1203
0.009
0
6mer
298-302
0.007
1
AC005523.2
hsa-miR-214-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601192
Biotype: antisense
Gene id: ENSG00000269604
Gene Name: AC005523.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3269-3292
0.008
0
7mer
3265-3279
0.006
2
7mer
3255-3271
0.006
0
8mer
1592-1616
0.005
5
6mer
1164-1168
0.003
8
LINC00282
hsa-miR-214-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_027048.1
Biotype: lincRNA
Gene id: NR_027048.1 (gene)
Gene Name: LINC00282
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3462-3485
0.006
1
7mer
3637-3645
0.005
0
6mer
694-712
0.004
1
7mer
3723-3748
0.003
0
6mer
3022-3039
0.003
3
7mer
3018-3039
0.003
1
6mer
1948-1969
0.002
3
6mer
2211-2231
0.002
1
6mer
2699-2724
0.001
1
XLOC_007447
hsa-miR-214-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016057
Biotype: transcript isomorph
Gene id: XLOC_007447
Gene Name: XLOC_007447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-281
0.014
1
7mer
44-68
0.010
1
6mer
215-228
0.004
1
XLOC_013188
hsa-miR-214-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026757
Biotype: transcript isomorph
Gene id: XLOC_013188
Gene Name: XLOC_013188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-341
0.012
0
7mer
898-914
0.011
0
6mer
823-844
0.005
1
RP11-148K1.10
hsa-miR-214-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000479085
Biotype: antisense
Gene id: ENSG00000243433
Gene Name: RP11-148K1.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-40
0.015
6
7mer
236-255
0.013
1
DAB1-AS1
hsa-miR-214-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591882
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-109
0.017
1
7mer
557-581
0.007
0
6mer
486-502
0.004
0
RP11-43N5.1
hsa-miR-214-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542219
Biotype: lincRNA
Gene id: ENSG00000255970
Gene Name: RP11-43N5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2313-2319
0.017
0
7mer
2193-2216
0.004
0
6mer
105-131
0.004
0
6mer
893-916
0.002
1
6mer
1322-1347
0.001
1
RP11-803D5.4
hsa-miR-214-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603052
Biotype: lincRNA
Gene id: ENSG00000270190
Gene Name: RP11-803D5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
274-292
0.020
4
6mer
332-351
0.006
1
6mer
126-148
0.003
1
XLOC_010725
hsa-miR-214-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022315
Biotype: transcript isomorph
Gene id: XLOC_010725
Gene Name: XLOC_010725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2432-2448
0.010
1
7mer
569-592
0.007
1
7mer
546-565
0.006
1
6mer
258-278
0.006
1
CTB-111H14.1
hsa-miR-214-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000592441
Biotype: sense_overlapping
Gene id: ENSG00000243797
Gene Name: CTB-111H14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-260
0.012
0
9mer
417-437
0.011
0
7mer
107-128
0.005
1
GUSBP11
hsa-miR-214-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000422506
Biotype: processed_transcript
Gene id: ENSG00000228315
Gene Name: GUSBP11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
728-752
0.010
1
7mer
1617-1637
0.006
0
7mer
1950-1973
0.005
0
6mer
1911-1929
0.005
2
7mer
1480-1505
0.002
Not Conserved
HAND2-AS1
hsa-miR-214-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2800-2827
0.012
3
7mer
669-680
0.008
5
6mer
433-458
0.007
6
6mer
545-568
0.002
0
LA16c-313D11.9
hsa-miR-214-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571933
Biotype: antisense
Gene id: ENSG00000260394
Gene Name: LA16c-313D11.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
406-428
0.013
1
7mer
203-226
0.011
5
6mer
1013-1036
0.003
3
6mer
583-595
0.001
0
RP11-475A13.2
hsa-miR-214-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1271-1292
0.024
1
6mer
1385-1408
0.004
0
RP5-991G20.1
hsa-miR-214-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563328
Biotype: antisense
Gene id: ENSG00000259768
Gene Name: RP5-991G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3595-3620
0.006
0
6mer
1297-1313
0.002
8
6mer
1783-1808
0.002
4
6mer
1370-1391
0.002
13
6mer
1348-1367
0.002
9
6mer
1348-1364
0.001
12
6mer
1336-1361
0.001
11
6mer
1387-1409
0.001
11
7mer
1785-1812
0.001
3
7mer
1318-1344
0.001
1
6mer
1309-1334
0.001
6
6mer
1317-1337
0.001
7
6mer
1317-1340
0.001
5
6mer
1299-1319
0.001
5
6mer
1297-1316
0.001
4
6mer
1575-1595
0.001
3
6mer
1335-1358
0.001
5
6mer
1875-1898
0.001
7
6mer
1870-1895
0.001
5
6mer
1866-1889
0.000
3
6mer
1847-1871
0.000
5
6mer
1835-1852
0.000
6
6mer
1869-1892
0.000
2
6mer
1884-1901
0.000
1
6mer
1884-1904
0.000
1
MKNK1-AS1
hsa-miR-214-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602433
Biotype: antisense
Gene id: ENSG00000269956
Gene Name: MKNK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-355
0.015
3
6mer
765-774
0.005
8
7mer
1492-1513
0.004
1
6mer
1257-1278
0.002
1
6mer
1410-1427
0.002
2
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