LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
AC109826.1
hsa-miR-214-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623301
Biotype: lincRNA
Gene id: ENSG00000226791
Gene Name: AC109826.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-282
0.017
1
7mer
423-446
0.012
1
TRIM36-IT1
hsa-miR-214-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503723
Biotype: sense_intronic
Gene id: ENSG00000250472
Gene Name: TRIM36-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
453-479
0.029
7
LINC01189
hsa-miR-214-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
110-114
0.018
1
7mer
2809-2823
0.008
0
6mer
1827-1852
0.002
0
RP11-180D21.3
hsa-miR-214-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412932
Biotype: lincRNA
Gene id: ENSG00000224943
Gene Name: RP11-180D21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-373
0.029
1
LINC00309
hsa-miR-214-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431020
Biotype: lincRNA
Gene id: ENSG00000230923
Gene Name: LINC00309
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2994-3020
0.010
0
7mer
2147-2152
0.005
1
7mer
727-733
0.004
0
7mer
1209-1229
0.003
1
6mer
1926-1945
0.002
4
6mer
1601-1616
0.002
2
7mer
1520-1539
0.002
0
6mer
2075-2093
0.001
1
6mer
1468-1481
0.001
Not Conserved
XLOC_002123
hsa-miR-214-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002666
Biotype: transcript isomorph
Gene id: XLOC_002123
Gene Name: XLOC_002123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2991-3017
0.010
0
7mer
2144-2149
0.005
1
7mer
724-730
0.004
0
7mer
1206-1226
0.003
1
6mer
1923-1942
0.002
4
6mer
1598-1613
0.002
2
7mer
1517-1536
0.002
0
6mer
2072-2090
0.001
1
6mer
1465-1478
0.001
Not Conserved
RP11-44N21.1
hsa-miR-214-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548361
Biotype: lincRNA
Gene id: ENSG00000257556
Gene Name: RP11-44N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-210
0.022
1
6mer
288-312
0.003
0
6mer
248-272
0.003
Not Conserved
DDX39B-AS1
hsa-miR-214-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000416684
Biotype: antisense
Gene id: ENSG00000234006
Gene Name: DDX39B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-424
0.029
1
RP11-37L2.1
hsa-miR-214-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000442716
Biotype: lincRNA
Gene id: ENSG00000234535
Gene Name: RP11-37L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-124
0.022
1
6mer
48-72
0.006
6
CTD-2583A14.8
hsa-miR-214-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597780
Biotype: sense_intronic
Gene id: ENSG00000269867
Gene Name: CTD-2583A14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
582-603
0.025
1
7mer
543-563
0.003
0
XLOC_005716
hsa-miR-214-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012168
Biotype: transcript isomorph
Gene id: XLOC_005716
Gene Name: XLOC_005716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-213
0.016
1
6mer
729-747
0.007
1
6mer
402-416
0.006
0
RP11-80B9.4
hsa-miR-214-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431139
Biotype: lincRNA
Gene id: ENSG00000230015
Gene Name: RP11-80B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-389
0.029
1
LINC01220
hsa-miR-214-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000561000
Biotype: lincRNA
Gene id: ENSG00000259687
Gene Name: LINC01220
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-141
0.029
1
AJ239322.1
hsa-miR-214-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419362
Biotype: lincRNA
Gene id: ENSG00000235615
Gene Name: AJ239322.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1132-1149
0.022
1
6mer
493-516
0.007
3
RTEL1-TNFRSF6B
hsa-miR-214-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_037882.1
Biotype: sense
Gene id: NR_037882.1 (gene)
Gene Name: RTEL1-TNFRSF6B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4618-4632
0.005
3
7mer
1770-1795
0.003
2
6mer
5540-5564
0.002
5
7mer
4145-4165
0.002
1
6mer
5418-5432
0.002
1
6mer
5526-5552
0.002
0
9mer
975-986
0.002
0
6mer
3130-3147
0.002
2
6mer
1080-1106
0.001
3
7mer
4757-4770
0.001
1
6mer
3317-3331
0.001
5
7mer
4785-4799
0.001
3
8mer+mismatch
4786-4813
0.001
0
6mer
1090-1115
0.001
1
6mer
1090-1112
0.001
1
6mer
1090-1109
0.001
1
8mer+mismatch
4757-4779
0.001
1
6mer
1796-1821
0.000
3
CTC-482H14.5
hsa-miR-214-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592429
Biotype: antisense
Gene id: ENSG00000267550
Gene Name: CTC-482H14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-71
0.025
0
6mer
109-134
0.003
0
LINC01002
hsa-miR-214-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620229
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
802-824
0.029
0
NUTM2A-AS1
hsa-miR-214-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413722
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
669-681
0.020
1
7mer
665-674
0.008
0
SNHG16
hsa-miR-214-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000493536
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1964-1988
0.014
1
6mer
2347-2362
0.005
1
6mer
2262-2280
0.004
1
6mer
1644-1668
0.003
1
6mer
232-248
0.003
1
FAM226B
hsa-miR-214-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026594.1
Biotype: sense
Gene id: NR_026594.1 (gene)
Gene Name: FAM226B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
502-524
0.019
2
6mer
1755-1780
0.006
1
6mer
1347-1371
0.004
2
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