LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000633
hsa-miR-214-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1502-1528
0.007
0
7mer
2841-2867
0.006
2
7mer
4757-4782
0.005
0
6mer
56-76
0.004
1
6mer
259-283
0.003
0
6mer
1107-1130
0.002
1
7mer
3236-3252
0.001
Not Conserved
6mer
3084-3097
0.001
Not Conserved
RP11-983P16.2
hsa-miR-214-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000435621
Biotype: sense_intronic
Gene id: ENSG00000257475
Gene Name: RP11-983P16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-73
0.022
1
6mer
86-102
0.007
5
AP000233.2
hsa-miR-214-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000418942
Biotype: lincRNA
Gene id: ENSG00000232512
Gene Name: AP000233.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
603-626
0.029
1
AP001046.6
hsa-miR-214-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435702
Biotype: lincRNA
Gene id: ENSG00000225637
Gene Name: AP001046.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
788-806
0.013
1
7mer
87-110
0.009
0
6mer
509-532
0.004
1
6mer
1911-1928
0.002
1
6mer
1478-1500
0.002
1
CTB-75G16.3
hsa-miR-214-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000618067
Biotype: lincRNA
Gene id: ENSG00000275720
Gene Name: CTB-75G16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
594-617
0.018
2
8mer
241-267
0.011
0
CTA-414D7.1
hsa-miR-214-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
138-164
0.004
1
8mer
6862-6877
0.004
1
7mer
1103-1127
0.004
1
6mer
5680-5685
0.003
1
6mer
8213-8236
0.002
1
6mer
351-366
0.002
Not Conserved
6mer
6352-6374
0.002
1
6mer
2327-2350
0.001
1
6mer
2741-2766
0.001
1
9mer
5389-5403
0.001
0
6mer
3954-3974
0.001
1
8mer+mismatch
7401-7418
0.001
1
6mer
2816-2837
0.001
1
6mer
6769-6783
0.001
Not Conserved
6mer
1261-1278
0.001
0
6mer
3972-3992
0.001
0
RP3-333B15.4
hsa-miR-214-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000564051
Biotype: lincRNA
Gene id: ENSG00000260202
Gene Name: RP3-333B15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2092-2110
0.022
2
7mer
2075-2094
0.007
0
RP11-359E8.3
hsa-miR-214-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417794
Biotype: lincRNA
Gene id: ENSG00000223649
Gene Name: RP11-359E8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-145
0.020
0
6mer
294-303
0.005
1
6mer
102-124
0.004
1
XLOC_009483
hsa-miR-214-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019682
Biotype: transcript isomorph
Gene id: XLOC_009483
Gene Name: XLOC_009483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4012-4031
0.016
1
6mer
358-378
0.005
0
7mer
1989-2007
0.004
0
6mer
584-605
0.002
0
6mer
549-564
0.002
0
LINC00339
hsa-miR-214-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416769
Biotype: lincRNA
Gene id: ENSG00000218510
Gene Name: LINC00339
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
788-812
0.022
2
6mer
832-849
0.007
5
LINC01006
hsa-miR-214-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440711
Biotype: lincRNA
Gene id: ENSG00000182648
Gene Name: LINC01006
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-184
0.022
1
6mer
274-283
0.007
1
LINC00663
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586816
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-44
0.020
0
6mer
32-44
0.009
0
AC004158.2
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561611
Biotype: lincRNA
Gene id: ENSG00000261008
Gene Name: AC004158.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
142-159
0.009
9
6mer
424-447
0.008
9
6mer
1608-1624
0.004
7
6mer
911-922
0.004
8
6mer
829-842
0.003
4
LINC01391
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495287
Biotype: lincRNA
Gene id: ENSG00000244578
Gene Name: LINC01391
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-570
0.017
2
8mer
1813-1838
0.009
3
6mer
1194-1217
0.003
8
FAM87A
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000330148
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3685-3704
0.007
0
7mer
3666-3690
0.006
0
6mer
3877-3899
0.004
1
6mer
3025-3051
0.002
0
6mer
1468-1493
0.002
1
6mer
3262-3280
0.002
Not Conserved
6mer
1125-1150
0.002
1
6mer
813-830
0.002
Not Conserved
6mer
3005-3030
0.001
1
RN7SL832P
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607781
Biotype: lincRNA
Gene id: ENSG00000243819
Gene Name: RN7SL832P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
715-735
0.015
1
8mer
97-119
0.014
1
C10orf85
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000369071
Biotype: lincRNA
Gene id: ENSG00000177234
Gene Name: C10orf85
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1966-1981
0.017
2
7mer
635-660
0.009
1
6mer
260-279
0.002
0
6mer
1110-1130
0.001
0
RP11-77H9.2
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565934
Biotype: antisense
Gene id: ENSG00000260276
Gene Name: RP11-77H9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-330
0.007
0
7mer
2248-2265
0.007
1
6mer
2248-2261
0.005
1
8mer
2066-2091
0.004
1
7mer
1500-1522
0.003
1
6mer
1351-1371
0.002
0
RP11-632K5.3
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502071
Biotype: lincRNA
Gene id: ENSG00000246211
Gene Name: RP11-632K5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-503
0.015
2
8mer
1978-1993
0.014
1
XLOC_009942
hsa-miR-214-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020640
Biotype: transcript isomorph
Gene id: XLOC_009942
Gene Name: XLOC_009942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-261
0.024
1
6mer
484-501
0.005
0
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