LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
DKFZp434J0226
hsa-miR-214-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593980
Biotype: lincRNA
Gene id: ENSG00000268460
Gene Name: DKFZp434J0226
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-66
0.012
Not Conserved
6mer
45-62
0.006
1
7mer
1108-1129
0.006
0
6mer
1015-1020
0.005
1
CTA-363E19.2
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607036
Biotype: antisense
Gene id: ENSG00000272072
Gene Name: CTA-363E19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-253
0.029
1
NUTM2A-AS1
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000458739
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-484
0.021
1
7mer
468-477
0.008
0
LINC01115
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415700
Biotype: lincRNA
Gene id: ENSG00000237667
Gene Name: LINC01115
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-149
0.020
1
7mer
295-317
0.009
0
RP11-1070N10.6
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000461160
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3349-3372
0.006
4
7mer
1353-1371
0.005
1
7mer
3121-3136
0.004
2
6mer
472-489
0.004
1
8mer+wobble
1938-1956
0.003
1
6mer
2512-2537
0.002
1
7mer
2858-2884
0.001
0
8mer+mismatch
2889-2908
0.001
1
7mer
1423-1441
0.001
0
6mer
1366-1389
0.000
0
6mer
1966-1991
0.000
0
6mer
1450-1468
0.000
0
FLJ31306
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556225
Biotype: antisense
Gene id: ENSG00000257621
Gene Name: FLJ31306
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-50
0.029
1
AL133493.2
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-569
0.011
2
8mer
1076-1082
0.009
0
8mer
1680-1701
0.005
1
6mer
5745-5760
0.002
0
6mer
3760-3780
0.001
1
6mer
3905-3931
0.001
1
WEE2-AS1
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000478332
Biotype: antisense
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2080-2096
0.010
0
7mer
1621-1642
0.006
1
6mer
2158-2185
0.005
1
6mer
276-291
0.003
1
6mer
996-1011
0.002
3
6mer
1560-1583
0.002
5
CTB-113D17.1
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609389
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3452-3474
0.018
1
6mer
2703-2728
0.006
7
6mer
494-512
0.004
2
7mer
2227-2242
0.002
1
NUTM2B-AS1
hsa-miR-214-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7492-7504
0.018
1
7mer
7488-7497
0.007
0
6mer
3910-3933
0.002
1
6mer
2746-2767
0.002
1
XLOC_001195
hsa-miR-214-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001810
Biotype: transcript isomorph
Gene id: XLOC_001195
Gene Name: XLOC_001195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7181-7206
0.006
0
9mer
3528-3551
0.005
1
7mer
8865-8884
0.004
1
6mer
9590-9610
0.002
3
7mer
3441-3462
0.002
1
6mer
9198-9223
0.002
3
6mer
1277-1302
0.002
2
6mer
7609-7627
0.002
Not Conserved
6mer
4333-4352
0.001
2
6mer
8087-8109
0.001
Not Conserved
6mer
5974-5991
0.001
1
6mer
8583-8604
0.001
0
RP11-1070N10.6
hsa-miR-214-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000495847
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3282-3305
0.006
4
7mer
1353-1371
0.005
1
7mer
3054-3069
0.005
2
6mer
472-489
0.004
1
8mer+wobble
1938-1956
0.003
1
6mer
2445-2470
0.002
1
7mer
2791-2817
0.001
0
8mer+mismatch
2822-2841
0.001
1
7mer
1423-1441
0.001
0
6mer
1366-1389
0.000
0
6mer
1966-1991
0.000
0
6mer
1450-1468
0.000
0
XLOC_005392
hsa-miR-214-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
184-209
0.006
1
7mer
1081-1091
0.006
1
7mer
8313-8330
0.005
1
6mer
467-489
0.004
1
6mer
3814-3830
0.002
2
6mer
7151-7172
0.002
0
6mer
1473-1491
0.002
0
6mer
4097-4112
0.001
0
6mer
1134-1159
0.001
1
6mer
1558-1581
0.001
1
CYP4F26P
hsa-miR-214-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000432139
Biotype: lincRNA
Gene id: ENSG00000226562
Gene Name: CYP4F26P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-366
0.029
0
XLOC_013486
hsa-miR-214-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028127
Biotype: transcript isomorph
Gene id: XLOC_013486
Gene Name: XLOC_013486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-584
0.014
Not Conserved
7mer
576-595
0.009
0
6mer
364-382
0.003
1
6mer
277-303
0.003
1
XLOC_008077
hsa-miR-214-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016941
Biotype: transcript isomorph
Gene id: XLOC_008077
Gene Name: XLOC_008077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
264-288
0.009
6
8mer
908-924
0.006
0
6mer
1749-1758
0.006
2
6mer
14-38
0.005
4
6mer
736-762
0.003
1
XLOC_004979
hsa-miR-214-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009771
Biotype: transcript isomorph
Gene id: XLOC_004979
Gene Name: XLOC_004979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-61
0.020
0
6mer
164-188
0.006
2
6mer
41-61
0.004
1
AC004448.5
hsa-miR-214-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000456537
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-270
0.022
1
6mer
44-62
0.007
0
LINC01123
hsa-miR-214-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000336905
Biotype: lincRNA
Gene id: ENSG00000204588
Gene Name: LINC01123
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1458-1476
0.018
1
8mer
831-845
0.009
1
6mer
1175-1191
0.002
1
XLOC_006934
hsa-miR-214-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014865
Biotype: transcript isomorph
Gene id: XLOC_006934
Gene Name: XLOC_006934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4160-4185
0.005
0
6mer
106-130
0.004
1
7mer
559-585
0.004
0
6mer
438-458
0.003
1
6mer
1569-1591
0.003
3
6mer
151-173
0.002
1
6mer
3385-3408
0.002
0
6mer
1064-1080
0.002
0
6mer
2377-2395
0.002
1
6mer
1627-1644
0.001
1
6mer
1064-1083
0.001
1
6mer
1075-1096
0.001
0
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