LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-156P1.3
hsa-miR-214-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575173
Biotype: lincRNA
Gene id: ENSG00000262879
Gene Name: RP11-156P1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-131
0.014
4
7mer
282-302
0.008
3
6mer
412-430
0.003
0
6mer
225-242
0.003
0
6mer
228-243
0.002
0
HCG18
hsa-miR-214-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602498
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-236
0.012
1
6mer
212-227
0.007
3
6mer
129-151
0.004
2
6mer
114-137
0.004
1
6mer
132-151
0.003
2
WEE2-AS1
hsa-miR-214-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000473776
Biotype: retained_intron
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-110
0.030
3
AP001619.3
hsa-miR-214-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000458654
Biotype: antisense
Gene id: ENSG00000236545
Gene Name: AP001619.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-243
0.014
2
7mer
297-316
0.008
0
6mer
33-53
0.008
1
CITF22-92A6.1
hsa-miR-214-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608290
Biotype: lincRNA
Gene id: ENSG00000273145
Gene Name: CITF22-92A6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1096-1112
0.022
1
7mer
643-657
0.008
1
RP11-216L13.19
hsa-miR-214-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000415992
Biotype: retained_intron
Gene id: ENSG00000273066
Gene Name: RP11-216L13.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
792-811
0.014
3
7mer
805-825
0.009
4
6mer
711-732
0.002
2
6mer
1658-1670
0.002
6
7mer
1524-1550
0.001
3
6mer
1939-1955
0.001
2
6mer
1658-1673
0.001
5
RP11-104N10.1
hsa-miR-214-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565623
Biotype: antisense
Gene id: ENSG00000261118
Gene Name: RP11-104N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
644-655
0.030
3
RP5-1023B21.1
hsa-miR-214-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000596207
Biotype: lincRNA
Gene id: ENSG00000267857
Gene Name: RP5-1023B21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-376
0.008
3
6mer
526-543
0.007
5
6mer
529-543
0.006
4
6mer
532-547
0.004
2
6mer
523-543
0.004
3
MRGPRG-AS1
hsa-miR-214-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000420873
Biotype: antisense
Gene id: ENSG00000236301
Gene Name: MRGPRG-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1806-1814
0.018
1
6mer
358-384
0.004
1
7mer
1736-1759
0.004
0
8mer
552-568
0.003
0
RP11-327J17.9
hsa-miR-214-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611343
Biotype: lincRNA
Gene id: ENSG00000277135
Gene Name: RP11-327J17.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-13
0.027
7
6mer
470-490
0.003
1
TTC28-AS1
hsa-miR-214-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540665
Biotype: processed_transcript
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-318
0.010
1
6mer
512-533
0.007
9
6mer
368-384
0.006
10
6mer
37-62
0.004
1
6mer
369-392
0.003
8
LINC00315
hsa-miR-214-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441947
Biotype: lincRNA
Gene id: ENSG00000184274
Gene Name: LINC00315
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2245-2270
0.016
1
8mer
592-619
0.005
0
8mer
760-783
0.003
1
6mer
165-185
0.002
0
6mer
1188-1209
0.002
1
6mer
1487-1508
0.002
1
XLOC_007737
hsa-miR-214-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016357
Biotype: transcript isomorph
Gene id: XLOC_007737
Gene Name: XLOC_007737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-230
0.030
1
CTB-89H12.4
hsa-miR-214-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-481
0.017
7
6mer
313-334
0.006
7
6mer
2364-2391
0.002
5
6mer
5124-5149
0.002
5
6mer
1373-1399
0.001
1
6mer
3325-3352
0.001
0
RP11-203H2.1
hsa-miR-214-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000439891
Biotype: lincRNA
Gene id: ENSG00000232234
Gene Name: RP11-203H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-58
0.024
1
6mer
25-43
0.006
1
SNHG14
hsa-miR-214-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000547292
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-464
0.014
1
6mer
253-278
0.006
1
6mer
240-258
0.005
1
8mer
14-39
0.005
Not Conserved
XLOC_013541
hsa-miR-214-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028182
Biotype: transcript isomorph
Gene id: XLOC_013541
Gene Name: XLOC_013541
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1183
0.012
1
8mer
275-290
0.011
0
6mer
1091-1112
0.006
4
LINC00648
hsa-miR-214-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555985
Biotype: lincRNA
Gene id: ENSG00000259129
Gene Name: LINC00648
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-330
0.021
1
7mer
2215-2238
0.006
1
6mer
2306-2327
0.003
1
XLOC_006450
hsa-miR-214-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013806
Biotype: transcript isomorph
Gene id: XLOC_006450
Gene Name: XLOC_006450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-226
0.018
0
7mer
240-261
0.006
0
7mer
198-210
0.006
0
ZMIZ1-AS1
hsa-miR-214-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428862
Biotype: antisense
Gene id: ENSG00000224596
Gene Name: ZMIZ1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-112
0.012
2
8mer
2423-2445
0.010
0
6mer
2202-2219
0.003
2
6mer
2199-2219
0.003
3
6mer
1023-1037
0.002
1
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