LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
CTD-2371O3.3
hsa-miR-214-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000596206
Biotype: antisense
Gene id: ENSG00000268403
Gene Name: CTD-2371O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
738-753
0.015
2
7mer
829-849
0.008
2
8mer
950-974
0.007
0
LINC00326
hsa-miR-214-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457339
Biotype: lincRNA
Gene id: ENSG00000231023
Gene Name: LINC00326
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-179
0.014
1
7mer
21-40
0.009
1
7mer
2102-2113
0.005
0
6mer
897-916
0.002
0
XLOC_005466
hsa-miR-214-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011192
Biotype: transcript isomorph
Gene id: XLOC_005466
Gene Name: XLOC_005466
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-179
0.014
1
7mer
21-40
0.009
1
7mer
2231-2242
0.005
0
6mer
897-916
0.002
0
HLA-F-AS1
hsa-miR-214-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399247
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1802-1815
0.017
0
6mer
1449-1453
0.006
1
6mer
1760-1784
0.004
0
6mer
1757-1779
0.003
0
MEG3
hsa-miR-214-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000452120
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3704-3730
0.008
7
7mer
569-587
0.006
1
6mer
145-161
0.005
4
8mer
151-176
0.005
1
6mer
1570-1592
0.002
1
8mer
2513-2538
0.001
1
6mer
1703-1722
0.001
3
6mer
1606-1624
0.001
2
6mer
2485-2504
0.001
0
XLOC_006073
hsa-miR-214-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014122
Biotype: transcript isomorph
Gene id: XLOC_006073
Gene Name: XLOC_006073
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
956-977
0.018
0
6mer
225-249
0.006
0
6mer
538-559
0.005
1
WI2-1959D15.1
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000584807
Biotype: lincRNA
Gene id: ENSG00000264527
Gene Name: WI2-1959D15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-84
0.030
1
RP11-283C24.1
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578585
Biotype: lincRNA
Gene id: ENSG00000264215
Gene Name: RP11-283C24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-264
0.019
0
6mer
1236-1263
0.006
0
6mer
445-461
0.005
0
LOC286437
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_039980.1
Biotype: sense
Gene id: NR_039980.1 (gene)
Gene Name: LOC286437
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-129
0.016
1
7mer
80-93
0.014
0
CTD-2034I21.1
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569986
Biotype: lincRNA
Gene id: ENSG00000260042
Gene Name: CTD-2034I21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-266
0.015
3
7mer
820-832
0.012
0
6mer
729-751
0.003
0
LINC00535
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501400
Biotype: antisense
Gene id: ENSG00000246662
Gene Name: LINC00535
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
341-353
0.027
8
6mer
1610-1628
0.003
0
XLOC_009549
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019755
Biotype: transcript isomorph
Gene id: XLOC_009549
Gene Name: XLOC_009549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
61-82
0.030
0
LL09NC01-139C3.1
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608264
Biotype: lincRNA
Gene id: ENSG00000273473
Gene Name: LL09NC01-139C3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-535
0.030
0
MIR133A1HG
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577659
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-67
0.023
2
7mer
88-96
0.007
Not Conserved
XLOC_003235
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006634
Biotype: transcript isomorph
Gene id: XLOC_003235
Gene Name: XLOC_003235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
295-318
0.023
0
7mer
2934-2957
0.002
0
6mer
841-853
0.002
1
6mer
4037-4050
0.001
1
6mer
2576-2599
0.001
0
6mer
2380-2405
0.000
Not Conserved
RP11-734K2.4
hsa-miR-214-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000605233
Biotype: antisense
Gene id: ENSG00000270344
Gene Name: RP11-734K2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4701-4727
0.016
3
7mer
3904-3931
0.004
2
6mer
3506-3531
0.003
4
6mer
4884-4910
0.002
4
6mer
2671-2684
0.002
3
6mer
3731-3755
0.002
0
6mer
6119-6138
0.001
0
XLOC_012662
hsa-miR-214-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026325
Biotype: transcript isomorph
Gene id: XLOC_012662
Gene Name: XLOC_012662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-319
0.024
5
6mer
252-277
0.006
1
AC008067.2
hsa-miR-214-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595478
Biotype: antisense
Gene id: ENSG00000237031
Gene Name: AC008067.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-261
0.030
2
CECR7
hsa-miR-214-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441006
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1985-2002
0.010
1
7mer
212-228
0.007
1
6mer
2413-2431
0.005
1
6mer
2593-2619
0.004
0
6mer
2286-2309
0.004
1
C5orf64
hsa-miR-214-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000313303
Biotype: processed_transcript
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2430-2453
0.006
1
7mer
2448-2463
0.006
0
6mer
914-934
0.005
6
6mer
2448-2459
0.004
5
6mer
2260-2286
0.003
2
6mer
1872-1876
0.003
2
6mer
2432-2456
0.002
1
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