LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
LCMT1-AS2
hsa-miR-214-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2245-2271
0.033
0
8mer
683-703
0.018
0
6mer
2140-2156
0.008
1
6mer
1380-1406
0.006
1
XLOC_005951
hsa-miR-214-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011629
Biotype: transcript isomorph
Gene id: XLOC_005951
Gene Name: XLOC_005951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
411-421
0.025
1
7mer
352-372
0.021
0
7mer
293-313
0.019
0
ERVH48-1
hsa-miR-214-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1650-1671
0.050
0
6mer
286-298
0.014
0
ZBED3-AS1
hsa-miR-214-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514288
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-85
0.064
1
LINC00662
hsa-miR-214-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590677
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-371
0.049
0
6mer
651-670
0.014
0
XLOC_013543
hsa-miR-214-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028193
Biotype: transcript isomorph
Gene id: XLOC_013543
Gene Name: XLOC_013543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3886-3898
0.014
1
7mer
241-264
0.010
0
7mer
3400-3423
0.004
Not Conserved
7mer
2249-2264
0.004
Not Conserved
7mer
3088-3103
0.004
Not Conserved
7mer
3024-3047
0.003
Not Conserved
7mer
2896-2911
0.003
Not Conserved
6mer
3573-3585
0.003
0
7mer
2780-2803
0.002
0
7mer
2377-2400
0.002
Not Conserved
7mer
2539-2562
0.002
Not Conserved
7mer
1981-1993
0.002
Not Conserved
6mer
3253-3264
0.002
Not Conserved
7mer
2037-2049
0.001
Not Conserved
6mer
3145-3156
0.001
Not Conserved
6mer
1779-1790
0.001
Not Conserved
7mer
2675-2699
0.001
Not Conserved
6mer
2675-2695
0.001
Not Conserved
6mer
1879-1891
0.001
Not Conserved
6mer
2441-2453
0.001
Not Conserved
6mer
2262-2288
0.000
Not Conserved
XLOC_000777
hsa-miR-214-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001449
Biotype: transcript isomorph
Gene id: XLOC_000777
Gene Name: XLOC_000777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-103
0.063
1
XLOC_005269
hsa-miR-214-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011296
Biotype: transcript isomorph
Gene id: XLOC_005269
Gene Name: XLOC_005269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4391-4397
0.032
3
7mer
2667-2678
0.007
4
6mer
4965-4987
0.005
1
6mer
2105-2109
0.003
5
6mer
23-40
0.003
2
6mer
1002-1023
0.003
1
6mer
3322-3342
0.002
0
6mer
3962-3986
0.002
2
6mer
1263-1290
0.002
1
6mer
433-447
0.001
Not Conserved
6mer
1293-1320
0.001
2
6mer
2151-2169
0.001
2
6mer
2267-2283
0.001
1
6mer
2673-2690
0.001
3
6mer
2167-2193
0.001
1
RP5-1198O20.4
hsa-miR-214-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447959
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-623
0.062
1
XLOC_002770
hsa-miR-214-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006165
Biotype: transcript isomorph
Gene id: XLOC_002770
Gene Name: XLOC_002770
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-503
0.036
5
7mer
89-111
0.021
1
6mer
684-710
0.005
2
XLOC_011650
hsa-miR-214-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024334
Biotype: transcript isomorph
Gene id: XLOC_011650
Gene Name: XLOC_011650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-30
0.035
0
7mer
665-690
0.012
3
7mer
448-460
0.011
1
6mer
972-993
0.004
1
RP11-507B12.1
hsa-miR-214-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560686
Biotype: lincRNA
Gene id: ENSG00000259675
Gene Name: RP11-507B12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-225
0.051
9
6mer
170-183
0.012
9
RP11-509J21.2
hsa-miR-214-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430387
Biotype: lincRNA
Gene id: ENSG00000237359
Gene Name: RP11-509J21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-246
0.062
10
RP11-527L4.6
hsa-miR-214-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592842
Biotype: lincRNA
Gene id: ENSG00000267420
Gene Name: RP11-527L4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-467
0.057
2
6mer
185-206
0.005
0
PCBP1-AS1
hsa-miR-214-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604346
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-319
0.033
3
7mer
92-108
0.015
1
6mer
166-189
0.007
4
6mer
427-437
0.006
2
DKFZp434L192
hsa-miR-214-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000566570
Biotype: lincRNA
Gene id: ENSG00000261275
Gene Name: DKFZp434L192
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-117
0.028
1
6mer
30-54
0.011
1
7mer
2049-2063
0.007
1
7mer
159-180
0.007
0
6mer
2911-2936
0.005
1
6mer
3659-3675
0.003
0
RP4-769N13.6
hsa-miR-214-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000486740
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-114
0.025
1
7mer
96-118
0.012
1
6mer
575-597
0.011
6
7mer
193-210
0.010
2
6mer
560-579
0.003
0
C21orf90
hsa-miR-214-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026548.1
Biotype: antisense
Gene id: NR_026548.1 (gene)
Gene Name: C21orf90
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-395
0.032
1
7mer
910-937
0.025
1
6mer
931-952
0.003
0
LINC00663
hsa-miR-214-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586645
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
672-696
0.050
1
6mer
1011-1036
0.007
0
6mer
1008-1024
0.004
0
CTD-2013N24.2
hsa-miR-214-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599467
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-91
0.060
11
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