LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
FLJ23867
hsa-miR-214-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026900.1
Biotype: sense
Gene id: NR_026900.1 (gene)
Gene Name: FLJ23867
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-427
0.021
6
7mer
1641-1660
0.004
1
6mer
448-452
0.003
0
6mer
2536-2555
0.002
0
RP11-730K11.1
hsa-miR-214-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501964
Biotype: antisense
Gene id: ENSG00000246790
Gene Name: RP11-730K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2534-2555
0.016
1
8mer
1029-1044
0.009
0
6mer
458-474
0.003
0
6mer
2382-2403
0.002
0
LINC00667
hsa-miR-214-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580082
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-124
0.018
6
7mer
86-104
0.007
4
6mer
479-504
0.006
2
LINC00176
hsa-miR-214-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000358393
Biotype: lincRNA
Gene id: ENSG00000196421
Gene Name: LINC00176
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-400
0.015
10
7mer
1080-1102
0.010
2
7mer
350-371
0.006
3
AC104654.2
hsa-miR-214-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427054
Biotype: lincRNA
Gene id: ENSG00000234362
Gene Name: AC104654.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-294
0.030
8
XLOC_001446
hsa-miR-214-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003659
Biotype: transcript isomorph
Gene id: XLOC_001446
Gene Name: XLOC_001446
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-378
0.023
5
6mer
637-656
0.004
1
6mer
1000-1024
0.004
Not Conserved
ZNF503-AS1
hsa-miR-214-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000524517
Biotype: lincRNA
Gene id: ENSG00000226051
Gene Name: ZNF503-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-63
0.015
1
6mer
575-592
0.007
4
6mer
58-80
0.005
2
7mer
334-351
0.003
1
RP11-1103G16.1
hsa-miR-214-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548631
Biotype: antisense
Gene id: ENSG00000257636
Gene Name: RP11-1103G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-340
0.030
8
RP11-280G9.1
hsa-miR-214-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505627
Biotype: lincRNA
Gene id: ENSG00000251127
Gene Name: RP11-280G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2471-2486
0.030
1
AC012074.2
hsa-miR-214-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431557
Biotype: lincRNA
Gene id: ENSG00000235072
Gene Name: AC012074.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-303
0.030
6
RP11-297L17.2
hsa-miR-214-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566645
Biotype: lincRNA
Gene id: ENSG00000260963
Gene Name: RP11-297L17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-268
0.019
1
6mer
319-333
0.006
2
7mer
349-363
0.005
0
RP13-221M14.2
hsa-miR-214-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437631
Biotype: lincRNA
Gene id: ENSG00000233336
Gene Name: RP13-221M14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
25-44
0.022
2
6mer
335-361
0.008
1
C22orf34
hsa-miR-214-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000343999
Biotype: lincRNA
Gene id: ENSG00000188511
Gene Name: C22orf34
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1971-1992
0.008
0
7mer
2640-2660
0.007
1
7mer
610-626
0.006
0
6mer
172-188
0.005
0
6mer
899-926
0.001
Not Conserved
6mer
1079-1096
0.001
Not Conserved
6mer
1305-1331
0.001
0
6mer
1076-1096
0.001
0
XLOC_006978
hsa-miR-214-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014912
Biotype: transcript isomorph
Gene id: XLOC_006978
Gene Name: XLOC_006978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-236
0.022
1
6mer
122-142
0.004
1
6mer
76-101
0.004
0
RP11-231E19.1
hsa-miR-214-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562796
Biotype: lincRNA
Gene id: ENSG00000260059
Gene Name: RP11-231E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2505-2513
0.009
5
7mer
2166-2191
0.007
1
6mer
2622-2645
0.007
4
6mer
559-582
0.004
1
6mer
2355-2370
0.002
1
LINC00396
hsa-miR-214-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000411690
Biotype: lincRNA
Gene id: ENSG00000231428
Gene Name: LINC00396
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-104
0.026
1
6mer
179-197
0.004
1
RP11-433J8.1
hsa-miR-214-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553378
Biotype: lincRNA
Gene id: ENSG00000258702
Gene Name: RP11-433J8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-205
0.011
1
8mer
2092-2108
0.005
0
6mer
2727-2731
0.005
0
6mer
2462-2480
0.003
1
6mer
2412-2434
0.003
1
6mer
970-988
0.003
0
XLOC_009349
hsa-miR-214-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020033
Biotype: transcript isomorph
Gene id: XLOC_009349
Gene Name: XLOC_009349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-438
0.015
1
6mer
722-737
0.012
2
6mer
246-268
0.003
Not Conserved
XLOC_007098
hsa-miR-214-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014518
Biotype: transcript isomorph
Gene id: XLOC_007098
Gene Name: XLOC_007098
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2464-2479
0.030
1
LINC00426
hsa-miR-214-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000416261
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-521
0.024
3
6mer
387-409
0.006
1
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