LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-690I21.2
hsa-miR-214-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000563949
Biotype: sense_overlapping
Gene id: ENSG00000261096
Gene Name: RP11-690I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-210
0.010
1
7mer
136-149
0.007
Not Conserved
7mer
193-214
0.006
1
6mer
1617-1635
0.003
1
6mer
806-820
0.001
1
6mer
833-855
0.001
1
6mer
807-823
0.001
0
XLOC_010734
hsa-miR-214-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022125
Biotype: transcript isomorph
Gene id: XLOC_010734
Gene Name: XLOC_010734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-673
0.009
2
7mer
1580-1585
0.007
1
8mer
898-904
0.006
1
6mer
280-292
0.004
1
6mer
2085-2103
0.003
0
6mer
1240-1259
0.002
2
RNASEH2B-AS1
hsa-miR-214-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000454605
Biotype: antisense
Gene id: ENSG00000233672
Gene Name: RNASEH2B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
904-926
0.031
1
XLOC_002209
hsa-miR-214-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004336
Biotype: transcript isomorph
Gene id: XLOC_002209
Gene Name: XLOC_002209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-336
0.027
0
6mer
267-287
0.003
0
RP11-498C9.15
hsa-miR-214-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582866
Biotype: lincRNA
Gene id: ENSG00000263731
Gene Name: RP11-498C9.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
942-964
0.019
0
7mer
2283-2304
0.010
1
6mer
837-851
0.002
1
RP11-380J14.1
hsa-miR-214-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412427
Biotype: lincRNA
Gene id: ENSG00000204362
Gene Name: RP11-380J14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
356-381
0.008
1
6mer
4368-4392
0.006
3
7mer
1081-1096
0.006
5
7mer
753-776
0.005
1
6mer
205-231
0.003
0
6mer
4032-4058
0.002
0
6mer
3036-3057
0.001
1
RP11-629G13.1
hsa-miR-214-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500537
Biotype: antisense
Gene id: ENSG00000247416
Gene Name: RP11-629G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-361
0.020
1
6mer
79-101
0.008
4
6mer
887-912
0.002
Not Conserved
RNASEH2B-AS1
hsa-miR-214-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_046552.1
Biotype: antisense
Gene id: NR_046552.1 (gene)
Gene Name: RNASEH2B-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-596
0.031
1
CTC-305H11.1
hsa-miR-214-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513283
Biotype: lincRNA
Gene id: ENSG00000248145
Gene Name: CTC-305H11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-230
0.023
1
6mer
210-226
0.008
4
XLOC_007279
hsa-miR-214-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5158-5183
0.014
1
6mer
298-321
0.008
6
6mer
4882-4909
0.005
4
6mer
4360-4387
0.003
Not Conserved
6mer
1918-1943
0.001
Not Conserved
RP11-161H23.9
hsa-miR-214-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553259
Biotype: antisense
Gene id: ENSG00000258334
Gene Name: RP11-161H23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2896-2914
0.008
8
7mer
1729-1752
0.006
10
7mer
614-638
0.004
0
7mer
2887-2901
0.002
7
6mer
1654-1666
0.002
13
6mer
454-475
0.002
1
6mer
1419-1436
0.001
4
6mer
1935-1953
0.001
2
6mer
1150-1168
0.001
0
6mer
1147-1162
0.001
6
6mer
2174-2194
0.001
0
6mer
1144-1162
0.001
3
6mer
1141-1162
0.000
1
XLOC_000397
hsa-miR-214-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000305
Biotype: transcript isomorph
Gene id: XLOC_000397
Gene Name: XLOC_000397
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
141-147
0.009
2
XXbac-BPG299F13.17
hsa-miR-214-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606367
Biotype: antisense
Gene id: ENSG00000272501
Gene Name: XXbac-BPG299F13.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2501-2518
0.013
0
6mer
2498-2509
0.007
1
7mer
1154-1175
0.006
0
6mer
440-461
0.002
0
6mer
1206-1226
0.001
0
6mer
410-427
0.001
Not Conserved
PVT1
hsa-miR-214-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524165
Biotype: lincRNA
Gene id: ENSG00000249859
Gene Name: PVT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-364
0.030
4
CTD-3118D7.1
hsa-miR-214-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558671
Biotype: sense_intronic
Gene id: ENSG00000259690
Gene Name: CTD-3118D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3271-3288
0.006
1
7mer
3183-3200
0.006
1
6mer
405-411
0.005
1
6mer
3268-3279
0.004
2
7mer
1895-1910
0.004
0
6mer
2984-3010
0.004
1
6mer
1554-1575
0.001
0
XLOC_008652
hsa-miR-214-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017720
Biotype: transcript isomorph
Gene id: XLOC_008652
Gene Name: XLOC_008652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3675-3688
0.009
0
7mer
3496-3522
0.006
0
6mer
3829-3842
0.004
0
6mer
565-583
0.004
3
6mer
2578-2602
0.003
3
7mer
2182-2198
0.002
2
6mer
1186-1196
0.002
0
XLOC_006931
hsa-miR-214-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014863
Biotype: transcript isomorph
Gene id: XLOC_006931
Gene Name: XLOC_006931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
466-492
0.027
1
6mer
509-536
0.003
0
AC104654.2
hsa-miR-214-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436551
Biotype: lincRNA
Gene id: ENSG00000234362
Gene Name: AC104654.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-274
0.030
8
RP11-61I13.3
hsa-miR-214-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607675
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1288-1310
0.013
9
7mer
3115-3139
0.007
1
6mer
2781-2805
0.004
6
6mer
929-954
0.003
3
6mer
2591-2614
0.002
3
6mer
1672-1688
0.001
1
6mer
1491-1506
0.001
0
RP1-79C4.1
hsa-miR-214-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413005
Biotype: lincRNA
Gene id: ENSG00000235303
Gene Name: RP1-79C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1163-1185
0.018
1
6mer
1847-1863
0.006
3
6mer
1293-1316
0.003
1
6mer
655-679
0.003
1
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