LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
AC009299.2
hsa-miR-214-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610254
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-146
0.026
12
6mer
424-450
0.006
5
RP11-817O13.8
hsa-miR-214-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563278
Biotype: lincRNA
Gene id: ENSG00000260274
Gene Name: RP11-817O13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1338-1343
0.018
1
6mer
1338-1346
0.006
1
7mer
556-580
0.004
1
6mer
750-761
0.003
2
RP11-215G15.5
hsa-miR-214-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-94
0.007
1
6mer
294-306
0.007
3
9mer
1051-1076
0.007
0
8mer
948-969
0.006
1
7mer
2259-2283
0.003
Not Conserved
6mer
1391-1418
0.001
1
U82695.10
hsa-miR-214-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569962
Biotype: lincRNA
Gene id: ENSG00000259886
Gene Name: U82695.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2692-2713
0.014
2
7mer
35-60
0.009
1
8mer
2196-2216
0.008
0
RP11-696D21.2
hsa-miR-214-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557475
Biotype: lincRNA
Gene id: ENSG00000258943
Gene Name: RP11-696D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-529
0.017
2
7mer
253-275
0.011
1
6mer
794-818
0.003
Not Conserved
RP5-1085F17.3
hsa-miR-214-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569087
Biotype: lincRNA
Gene id: ENSG00000260257
Gene Name: RP5-1085F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2071-2090
0.011
1
7mer
1368-1381
0.008
1
6mer
2044-2068
0.006
3
6mer
89-97
0.004
1
6mer
94-120
0.002
0
WEE2-AS1
hsa-miR-214-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000488785
Biotype: antisense
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2110-2126
0.010
0
8mer
205-220
0.007
1
6mer
2188-2215
0.005
1
6mer
1854-1877
0.004
5
6mer
570-585
0.003
1
6mer
1290-1305
0.003
3
XLOC_010664
hsa-miR-214-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022059
Biotype: transcript isomorph
Gene id: XLOC_010664
Gene Name: XLOC_010664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-156
0.024
7
6mer
125-139
0.007
6
XLOC_000332
hsa-miR-214-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001088
Biotype: transcript isomorph
Gene id: XLOC_000332
Gene Name: XLOC_000332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-293
0.015
1
8mer
282-306
0.010
1
6mer
264-277
0.006
2
RP11-474P2.6
hsa-miR-214-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621248
Biotype: lincRNA
Gene id: ENSG00000275481
Gene Name: RP11-474P2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2702-2715
0.010
2
7mer
2633-2648
0.007
0
6mer
2788-2799
0.004
1
6mer
283-300
0.004
1
6mer
1333-1355
0.003
2
6mer
2270-2280
0.002
0
6mer
1550-1575
0.001
1
MYCNOS
hsa-miR-214-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420452
Biotype: antisense
Gene id: ENSG00000233718
Gene Name: MYCNOS
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1110-1120
0.027
4
6mer
410-434
0.004
3
AC006003.3
hsa-miR-214-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448541
Biotype: sense_intronic
Gene id: ENSG00000231515
Gene Name: AC006003.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-289
0.019
4
6mer
290-315
0.007
4
6mer
287-307
0.005
1
DLX6-AS1
hsa-miR-214-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
140-164
0.008
4
6mer
112-127
0.004
1
6mer
14425-14444
0.004
1
7mer
12071-12091
0.003
0
7mer
13909-13930
0.003
1
6mer
13552-13556
0.002
1
7mer
7489-7513
0.002
4
6mer
4325-4346
0.002
0
6mer
12396-12413
0.001
0
6mer
1613-1618
0.001
1
6mer
1737-1758
0.001
2
RP11-133K1.7
hsa-miR-214-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568093
Biotype: sense_intronic
Gene id: ENSG00000260648
Gene Name: RP11-133K1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-110
0.016
1
8mer
654-667
0.006
3
6mer
3422-3433
0.004
2
6mer
1092-1104
0.003
2
6mer
3154-3180
0.002
2
RP11-57H14.4
hsa-miR-214-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564352
Biotype: sense_overlapping
Gene id: ENSG00000260917
Gene Name: RP11-57H14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
411-430
0.017
0
7mer
3935-3959
0.010
1
8mer
1217-1240
0.004
2
XLOC_012115
hsa-miR-214-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025156
Biotype: transcript isomorph
Gene id: XLOC_012115
Gene Name: XLOC_012115
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-93
0.021
3
8mer
796-815
0.005
0
7mer
839-858
0.003
0
8mer+wobble
804-823
0.001
0
PARD6G-AS1
hsa-miR-214-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588226
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
806-831
0.009
1
6mer
503-519
0.008
1
6mer
548-571
0.008
1
6mer
548-568
0.006
1
PVT1
hsa-miR-214-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523328
Biotype: lincRNA
Gene id: ENSG00000249859
Gene Name: PVT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-249
0.031
4
AC093642.3
hsa-miR-214-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429456
Biotype: lincRNA
Gene id: ENSG00000237940
Gene Name: AC093642.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1857-1882
0.011
0
7mer
1778-1792
0.005
Not Conserved
7mer
694-708
0.004
0
7mer
1308-1326
0.004
0
6mer
472-492
0.003
0
6mer
1169-1192
0.002
Not Conserved
6mer
533-560
0.002
Not Conserved
RP11-309H21.3
hsa-miR-214-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-73
0.022
0
7mer
1777-1797
0.009
0
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