LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-332J15.4
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606566
Biotype: lincRNA
Gene id: ENSG00000272071
Gene Name: RP11-332J15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
391-415
0.031
1
PCBP1-AS1
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458686
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-254
0.031
3
XLOC_012174
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025353
Biotype: transcript isomorph
Gene id: XLOC_012174
Gene Name: XLOC_012174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-532
0.025
7
6mer
512-535
0.006
1
GS1-600G8.3
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000431486
Biotype: antisense
Gene id: ENSG00000231216
Gene Name: GS1-600G8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2046-2064
0.012
1
7mer
1484-1504
0.010
1
6mer
257-278
0.003
0
6mer
1472-1489
0.003
1
6mer
932-955
0.002
1
6mer
932-958
0.001
1
RP5-821D11.7
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000333487
Biotype: antisense
Gene id: ENSG00000184068
Gene Name: RP5-821D11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2940-2957
0.009
3
7mer
299-317
0.009
0
6mer
2904-2912
0.006
2
6mer
355-377
0.003
1
6mer
477-490
0.002
0
6mer
1030-1047
0.002
0
RP5-857K21.1
hsa-miR-214-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417636
Biotype: lincRNA
Gene id: ENSG00000231709
Gene Name: RP5-857K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-262
0.024
0
6mer
180-199
0.008
0
STAG3L5P-PVRIG2P-PILRB
hsa-miR-214-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036569.1
Biotype: sense
Gene id: NR_036569.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3665-3679
0.006
0
8mer
2109-2125
0.003
0
6mer
1307-1333
0.003
4
7mer
2008-2031
0.003
1
7mer
3146-3166
0.003
0
6mer
987-1004
0.003
2
7mer
2563-2583
0.002
1
7mer
1485-1512
0.001
0
6mer
1108-1124
0.001
2
7mer
2558-2574
0.001
1
7mer
2543-2562
0.001
1
6mer
2495-2513
0.001
1
6mer
1632-1654
0.001
1
6mer
2543-2565
0.001
2
7mer
1731-1750
0.001
0
LINC00863
hsa-miR-214-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000439559
Biotype: lincRNA
Gene id: ENSG00000224914
Gene Name: LINC00863
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3141-3165
0.016
0
7mer
706-731
0.007
Not Conserved
6mer
2550-2577
0.004
0
6mer
3078-3093
0.003
Not Conserved
6mer
877-899
0.001
Not Conserved
RP1-140K8.5
hsa-miR-214-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000566733
Biotype: lincRNA
Gene id: ENSG00000260604
Gene Name: RP1-140K8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-410
0.006
0
6mer
279-292
0.004
1
6mer
6993-7009
0.004
0
7mer
1191-1218
0.004
1
6mer
6885-6901
0.003
0
7mer
1952-1977
0.003
1
6mer
5452-5475
0.002
3
6mer
3949-3962
0.001
0
6mer
4430-4446
0.001
2
6mer
1103-1125
0.001
1
6mer
1054-1072
0.001
Not Conserved
C14orf64
hsa-miR-214-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000512901
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1804-1818
0.020
1
7mer
976-1001
0.011
2
LINC00969
hsa-miR-214-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608737
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
408-434
0.011
5
8mer
240-266
0.009
0
8mer
389-404
0.005
0
8mer+wobble
277-294
0.003
0
6mer
724-750
0.003
0
XLOC_013162
hsa-miR-214-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027115
Biotype: transcript isomorph
Gene id: XLOC_013162
Gene Name: XLOC_013162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
774-795
0.031
0
LINC00698
hsa-miR-214-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027104.1
Biotype: lincRNA
Gene id: NR_027104.1 (gene)
Gene Name: LINC00698
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-148
0.026
5
6mer
1521-1533
0.003
Not Conserved
6mer
1521-1536
0.002
0
RP11-486L19.2
hsa-miR-214-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565643
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2417-2432
0.016
9
9mer
1889-1908
0.010
4
6mer
2296-2313
0.003
4
6mer
2333-2351
0.002
1
CASC9
hsa-miR-214-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103850.1
Biotype: lincRNA
Gene id: NR_103850.1 (gene)
Gene Name: CASC9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-176
0.031
3
LOC644656
hsa-miR-214-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_036539.1
Biotype: antisense
Gene id: NR_036539.1 (gene)
Gene Name: LOC644656
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
738-753
0.016
2
7mer
829-849
0.008
2
8mer
950-974
0.007
0
RP11-486L19.2
hsa-miR-214-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000536986
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2555-2570
0.021
9
9mer
1889-1908
0.010
4
XLOC_008058
hsa-miR-214-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017237
Biotype: transcript isomorph
Gene id: XLOC_008058
Gene Name: XLOC_008058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1332-1351
0.027
1
6mer
1905-1920
0.005
1
LINC00929
hsa-miR-214-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556159
Biotype: lincRNA
Gene id: ENSG00000259150
Gene Name: LINC00929
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
797-819
0.018
1
7mer
960-975
0.011
Not Conserved
6mer
198-212
0.003
0
LINC00339
hsa-miR-214-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000404210
Biotype: pseudogene
Gene id: ENSG00000218510
Gene Name: LINC00339
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-436
0.025
2
6mer
456-473
0.006
5
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