LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-317J10.4
hsa-miR-214-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520459
Biotype: lincRNA
Gene id: ENSG00000254380
Gene Name: RP11-317J10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-152
0.032
3
AP000230.1
hsa-miR-214-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000608591
Biotype: lincRNA
Gene id: ENSG00000273492
Gene Name: AP000230.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1850-1875
0.011
0
7mer
1601-1618
0.009
0
7mer
1895-1919
0.008
0
6mer
1773-1791
0.004
1
AP003774.6
hsa-miR-214-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
859-876
0.026
2
6mer
182-198
0.006
0
AC005355.2
hsa-miR-214-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515627
Biotype: lincRNA
Gene id: ENSG00000251169
Gene Name: AC005355.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-49
0.013
2
7mer
753-764
0.009
1
7mer
817-833
0.006
2
6mer
219-245
0.003
2
AC078852.2
hsa-miR-214-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515842
Biotype: sense_intronic
Gene id: ENSG00000253399
Gene Name: AC078852.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-414
0.025
3
6mer
112-133
0.004
1
6mer
200-223
0.002
0
RP11-276H19.1
hsa-miR-214-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000415801
Biotype: lincRNA
Gene id: ENSG00000226237
Gene Name: RP11-276H19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-196
0.016
1
8mer
398-418
0.009
0
6mer
182-205
0.004
3
6mer
1874-1885
0.002
1
6mer
2280-2303
0.001
0
GUSBP11
hsa-miR-214-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445682
Biotype: processed_transcript
Gene id: ENSG00000228315
Gene Name: GUSBP11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
728-751
0.010
1
7mer
2912-2932
0.006
0
7mer
3245-3268
0.005
0
6mer
3206-3224
0.005
2
7mer
2775-2800
0.002
Not Conserved
6mer
1013-1033
0.001
1
6mer
1435-1457
0.001
1
CTBP1-AS2
hsa-miR-214-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507044
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-458
0.032
0
AC138647.1
hsa-miR-214-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000427937
Biotype: lincRNA
Gene id: ENSG00000226490
Gene Name: AC138647.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
358-373
0.016
5
7mer
496-513
0.010
2
6mer
387-406
0.003
2
6mer
38-56
0.002
1
6mer
501-516
0.002
0
RP4-671O14.6
hsa-miR-214-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8860-8874
0.006
2
8mer
4735-4753
0.004
1
7mer
13193-13212
0.004
1
6mer
509-535
0.003
2
8mer
8993-9012
0.003
1
6mer
391-417
0.003
1
8mer
7981-7997
0.003
1
6mer
3410-3431
0.001
0
7mer
1326-1349
0.001
0
6mer
9166-9182
0.001
0
6mer
7467-7491
0.001
2
6mer
12351-12374
0.001
0
6mer
3490-3506
0.001
2
TRIM52-AS1
hsa-miR-214-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514146
Biotype: lincRNA
Gene id: ENSG00000248275
Gene Name: TRIM52-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
455-467
0.021
2
6mer
160-183
0.008
2
6mer
400-417
0.003
0
LINC01088
hsa-miR-214-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513153
Biotype: antisense
Gene id: ENSG00000249307
Gene Name: LINC01088
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-150
0.019
1
7mer
61-81
0.009
2
6mer
386-406
0.004
1
RP11-680F8.1
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1525-1535
0.011
1
7mer
36-62
0.008
0
6mer
691-708
0.004
1
6mer
2455-2478
0.003
0
6mer
278-296
0.003
1
6mer
1690-1717
0.002
1
LINC00652
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000455340
Biotype: lincRNA
Gene id: ENSG00000179935
Gene Name: LINC00652
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-264
0.022
3
6mer
443-463
0.007
3
6mer
304-327
0.002
1
LINC01347
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431528
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-167
0.032
0
RP11-286E11.1
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499098
Biotype: antisense
Gene id: ENSG00000245293
Gene Name: RP11-286E11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2759-2784
0.023
6
7mer
1760-1768
0.004
0
6mer
565-580
0.004
4
GRID1-AS1
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038986.1
Biotype: antisense
Gene id: NR_038986.1 (gene)
Gene Name: GRID1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2043-2060
0.015
3
7mer
1461-1473
0.007
2
6mer
145-152
0.004
2
7mer
1461-1477
0.003
1
6mer
1408-1435
0.002
1
PPP3CB-AS1
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600206
Biotype: antisense
Gene id: ENSG00000221817
Gene Name: PPP3CB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
627-647
0.009
8
7mer
696-721
0.009
8
6mer
627-650
0.007
10
7mer
607-633
0.004
3
6mer
216-240
0.002
Not Conserved
CASC9
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103849.1
Biotype: lincRNA
Gene id: NR_103849.1 (gene)
Gene Name: CASC9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-176
0.031
3
CTD-2134A5.3
hsa-miR-214-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556653
Biotype: lincRNA
Gene id: ENSG00000258914
Gene Name: CTD-2134A5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-92
0.026
1
6mer
83-106
0.005
1
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