LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP4-753M9.1
hsa-miR-214-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424580
Biotype: sense_intronic
Gene id: ENSG00000230922
Gene Name: RP4-753M9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-87
0.027
5
8mer
1290-1310
0.005
1
XLOC_001414
hsa-miR-214-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003624
Biotype: transcript isomorph
Gene id: XLOC_001414
Gene Name: XLOC_001414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-888
0.025
0
6mer
921-938
0.004
2
6mer
790-809
0.003
2
XLOC_002601
hsa-miR-214-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005968
Biotype: transcript isomorph
Gene id: XLOC_002601
Gene Name: XLOC_002601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-691
0.020
2
6mer
259-281
0.006
2
6mer
276-295
0.004
1
6mer
533-556
0.003
1
PCBP1-AS1
hsa-miR-214-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421255
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-253
0.032
3
RP11-742B18.1
hsa-miR-214-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506480
Biotype: antisense
Gene id: ENSG00000249001
Gene Name: RP11-742B18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-430
0.022
1
7mer
714-731
0.006
0
6mer
212-238
0.004
1
MRGPRG-AS1
hsa-miR-214-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000434798
Biotype: antisense
Gene id: ENSG00000236301
Gene Name: MRGPRG-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1773-1781
0.021
1
6mer
325-351
0.005
1
7mer
1703-1726
0.003
0
8mer
519-535
0.003
0
SMC2-AS1
hsa-miR-214-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603487
Biotype: lincRNA
Gene id: ENSG00000270332
Gene Name: SMC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5740-5753
0.010
1
7mer
6411-6430
0.009
1
6mer
5975-5995
0.003
1
7mer
2466-2484
0.003
1
7mer
3736-3759
0.003
1
6mer
2068-2084
0.002
1
6mer
3114-3130
0.001
0
XLOC_013064
hsa-miR-214-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
351-368
0.015
1
6mer
2526-2547
0.009
1
6mer
1711-1732
0.008
1
XLOC_006617
hsa-miR-214-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013978
Biotype: transcript isomorph
Gene id: XLOC_006617
Gene Name: XLOC_006617
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2148-2173
0.014
1
7mer
316-330
0.009
0
8mer
3479-3500
0.003
Not Conserved
6mer
3779-3798
0.002
Not Conserved
6mer
290-310
0.002
1
6mer
2041-2057
0.001
1
6mer
1759-1785
0.001
1
AC016912.3
hsa-miR-214-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418415
Biotype: lincRNA
Gene id: ENSG00000228100
Gene Name: AC016912.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-360
0.023
0
9mer
450-469
0.009
0
CTD-3065J16.6
hsa-miR-214-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000561181
Biotype: antisense
Gene id: ENSG00000204791
Gene Name: CTD-3065J16.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
156-173
0.004
3
6mer
975-994
0.004
Not Conserved
6mer
160-176
0.003
3
6mer
160-179
0.003
3
7mer
76-98
0.003
1
6mer
630-656
0.003
2
6mer
165-182
0.003
2
6mer
863-884
0.002
0
6mer
149-170
0.002
Not Conserved
6mer
583-606
0.002
1
6mer
651-674
0.001
3
6mer
670-695
0.001
4
6mer
651-671
0.001
3
CTD-3193O13.13
hsa-miR-214-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595655
Biotype: antisense
Gene id: ENSG00000268149
Gene Name: CTD-3193O13.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26-48
0.032
8
RP11-277B15.3
hsa-miR-214-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606967
Biotype: lincRNA
Gene id: ENSG00000272205
Gene Name: RP11-277B15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-392
0.032
9
NUTM2A-AS1
hsa-miR-214-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413961
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
395-407
0.023
1
7mer
391-400
0.009
0
MIR133A1HG
hsa-miR-214-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3996-4013
0.018
2
7mer
4034-4042
0.008
Not Conserved
6mer
1699-1712
0.004
11
6mer
1626-1645
0.002
8
RP11-344E13.3
hsa-miR-214-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-223
0.023
0
6mer
261-278
0.009
0
GUSBP11
hsa-miR-214-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000451837
Biotype: processed_transcript
Gene id: ENSG00000228315
Gene Name: GUSBP11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
844-867
0.010
1
7mer
2908-2928
0.007
0
7mer
3164-3187
0.005
0
6mer
3125-3143
0.005
2
7mer
2771-2796
0.002
Not Conserved
6mer
1551-1573
0.001
1
6mer
1129-1149
0.001
1
RP11-196E1.3
hsa-miR-214-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532153
Biotype: antisense
Gene id: ENSG00000254561
Gene Name: RP11-196E1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
474-488
0.008
2
7mer
4009-4029
0.006
3
7mer
625-643
0.004
1
6mer
24-47
0.003
2
6mer
170-178
0.003
1
6mer
3817-3837
0.003
1
6mer
894-917
0.003
4
6mer
1805-1816
0.001
3
RP1-240K6.3
hsa-miR-214-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000515412
Biotype: antisense
Gene id: ENSG00000251393
Gene Name: RP1-240K6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-50
0.032
5
RP11-587P21.3
hsa-miR-214-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551075
Biotype: lincRNA
Gene id: ENSG00000257863
Gene Name: RP11-587P21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
817-839
0.017
0
6mer
755-774
0.014
6
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