LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-268J15.5
hsa-miR-214-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000373137
Biotype: antisense
Gene id: ENSG00000116883
Gene Name: RP11-268J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-590
0.013
1
8mer
490-514
0.009
1
7mer
644-671
0.004
0
6mer
1048-1062
0.004
3
6mer
252-273
0.003
Not Conserved
CTC-459F4.3
hsa-miR-214-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588318
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-215
0.021
0
6mer
240-257
0.012
0
RP13-1039J1.2
hsa-miR-214-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000490013
Biotype: lincRNA
Gene id: ENSG00000184115
Gene Name: RP13-1039J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2328-2345
0.030
1
7mer
1044-1068
0.002
0
XLOC_010133
hsa-miR-214-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020848
Biotype: transcript isomorph
Gene id: XLOC_010133
Gene Name: XLOC_010133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
758-776
0.032
0
A1BG-AS1
hsa-miR-214-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600686
Biotype: antisense
Gene id: ENSG00000268895
Gene Name: A1BG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
984-1000
0.015
1
8mer
429-453
0.005
0
7mer
910-934
0.005
0
6mer
107-121
0.005
2
6mer
404-424
0.003
0
RP11-15H20.6
hsa-miR-214-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596561
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
519-542
0.027
1
7mer
296-322
0.005
Not Conserved
RP11-600F24.7
hsa-miR-214-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000568177
Biotype: antisense
Gene id: ENSG00000260285
Gene Name: RP11-600F24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-177
0.013
1
6mer
784-799
0.003
1
7mer
1635-1655
0.002
1
6mer
3307-3324
0.002
1
6mer
2254-2278
0.002
1
7mer
3744-3761
0.002
1
6mer
689-713
0.002
1
6mer
1277-1296
0.002
1
6mer
735-760
0.002
1
7mer
1898-1918
0.001
0
7mer
1270-1289
0.001
Not Conserved
6mer
1274-1289
0.001
1
RP11-15H20.6
hsa-miR-214-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594766
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
525-548
0.027
1
7mer
302-328
0.005
Not Conserved
CTD-2332E11.2
hsa-miR-214-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598116
Biotype: lincRNA
Gene id: ENSG00000268560
Gene Name: CTD-2332E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
398-422
0.017
0
6mer
393-419
0.012
0
6mer
293-309
0.003
Not Conserved
PLCE1-AS2
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000453183
Biotype: antisense
Gene id: ENSG00000232913
Gene Name: PLCE1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
64-86
0.032
4
CTD-2291D10.4
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594318
Biotype: lincRNA
Gene id: ENSG00000267886
Gene Name: CTD-2291D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-222
0.032
0
RP4-569M23.2
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000413818
Biotype: antisense
Gene id: ENSG00000231119
Gene Name: RP4-569M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1205-1229
0.026
6
6mer
1750-1773
0.006
Not Conserved
C14orf64
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000502187
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2065-2079
0.022
1
7mer
1082-1107
0.011
2
NAMA
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000605707
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
183-192
0.017
2
7mer
822-841
0.010
4
7mer
314-330
0.005
1
NR2F1-AS1
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606739
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-62
0.021
1
7mer
564-573
0.011
5
RP11-190J23.1
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000549878
Biotype: antisense
Gene id: ENSG00000257284
Gene Name: RP11-190J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-197
0.023
7
6mer
361-373
0.005
5
6mer
261-284
0.004
6
RP11-204N11.1
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555187
Biotype: lincRNA
Gene id: ENSG00000258869
Gene Name: RP11-204N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2999-3025
0.014
0
6mer
2922-2934
0.006
1
6mer
2919-2934
0.005
1
6mer
2916-2930
0.004
1
6mer
1999-2021
0.003
Not Conserved
XLOC_012138
hsa-miR-214-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025860
Biotype: transcript isomorph
Gene id: XLOC_012138
Gene Name: XLOC_012138
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
819-846
0.016
0
6mer
132-148
0.016
0
C21orf90
hsa-miR-214-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000330490
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
382-394
0.032
1
CTA-342B11.3
hsa-miR-214-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9109-9126
0.008
0
7mer
2601-2615
0.004
Not Conserved
7mer
20992-21016
0.003
0
7mer
22572-22591
0.002
Not Conserved
7mer
2082-2099
0.002
0
6mer
20402-20407
0.002
1
6mer
1899-1926
0.002
1
6mer
21639-21654
0.002
Not Conserved
6mer
11609-11626
0.002
1
6mer
19891-19911
0.001
0
7mer
22712-22730
0.001
Not Conserved
6mer
4888-4900
0.001
0
6mer
2683-2702
0.001
Not Conserved
6mer
23200-23223
0.001
Not Conserved
6mer
2713-2735
0.001
Not Conserved
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