LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_005278
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011803
Biotype: transcript isomorph
Gene id: XLOC_005278
Gene Name: XLOC_005278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
996-1015
0.010
6
7mer
6022-6027
0.008
0
7mer
4169-4184
0.004
3
7mer
3411-3431
0.003
1
7mer
2146-2170
0.003
0
6mer
5173-5191
0.002
Not Conserved
6mer
3592-3613
0.001
2
6mer
1834-1860
0.001
0
RP11-193H5.1
hsa-miR-214-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450451
Biotype: antisense
Gene id: ENSG00000237250
Gene Name: RP11-193H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
732-754
0.012
3
7mer
233-252
0.010
0
6mer
2713-2732
0.004
0
7mer
1582-1605
0.004
1
6mer
1926-1949
0.002
2
6mer
1600-1613
0.000
0
CTD-2291D10.3
hsa-miR-214-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599269
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-368
0.033
0
RP11-15H20.6
hsa-miR-214-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598053
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-528
0.028
1
7mer
207-233
0.005
Not Conserved
MIR17HG
hsa-miR-214-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000581816
Biotype: lincRNA
Gene id: ENSG00000215417
Gene Name: MIR17HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-670
0.017
6
7mer
1155-1182
0.010
10
6mer
1258-1283
0.006
13
CECR7
hsa-miR-214-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609596
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-348
0.012
1
8mer
2197-2217
0.010
Not Conserved
6mer
632-655
0.003
1
6mer
759-777
0.003
1
6mer
939-965
0.003
0
6mer
1330-1356
0.002
Not Conserved
LINC-ROR
hsa-miR-214-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_048536.1
Biotype: lincRNA
Gene id: NR_048536.1 (gene)
Gene Name: LINC-ROR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2011-2017
0.026
1
6mer
466-488
0.006
1
RP4-769N13.6
hsa-miR-214-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602366
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-258
0.023
1
7mer
240-262
0.010
1
IPO11-LRRC70
hsa-miR-214-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_073584.1
Biotype: sense
Gene id: NR_073584.1 (gene)
Gene Name: IPO11-LRRC70
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-627
0.030
7
6mer
1332-1353
0.002
2
CTB-178M22.1
hsa-miR-214-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517408
Biotype: antisense
Gene id: ENSG00000253925
Gene Name: CTB-178M22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2050-2055
0.020
3
7mer
1981-2007
0.007
1
6mer
418-436
0.006
7
CTC-248O19.1
hsa-miR-214-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517634
Biotype: antisense
Gene id: ENSG00000253653
Gene Name: CTC-248O19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
754-767
0.023
8
6mer
97-105
0.006
0
6mer
751-767
0.004
5
RP11-23J9.4
hsa-miR-214-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000529787
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4583-4607
0.006
3
6mer
269-291
0.005
7
6mer
5383-5407
0.004
3
6mer
4786-4799
0.004
7
9mer
1758-1783
0.003
1
7mer
4523-4548
0.002
1
7mer
1493-1518
0.002
4
7mer
1278-1299
0.002
0
6mer
1818-1842
0.002
7
7mer
1627-1650
0.002
1
FAR2P1
hsa-miR-214-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026758.1
Biotype: lincRNA
Gene id: NR_026758.1 (gene)
Gene Name: FAR2P1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-149
0.010
1
7mer
2655-2669
0.005
Not Conserved
7mer
3645-3667
0.005
1
7mer
3695-3715
0.004
0
6mer
211-230
0.003
1
6mer
4095-4120
0.002
1
6mer
3352-3369
0.002
1
6mer
3175-3193
0.001
Not Conserved
LINC00698
hsa-miR-214-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468072
Biotype: lincRNA
Gene id: ENSG00000244342
Gene Name: LINC00698
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-269
0.027
5
6mer
1642-1654
0.003
Not Conserved
6mer
1642-1657
0.002
0
RP11-48F14.1
hsa-miR-214-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000458099
Biotype: lincRNA
Gene id: ENSG00000224406
Gene Name: RP11-48F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-206
0.013
2
7mer
86-102
0.010
2
7mer
293-312
0.009
1
LINC01128
hsa-miR-214-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610067
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-468
0.032
1
RP3-326I13.1
hsa-miR-214-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440955
Biotype: lincRNA
Gene id: ENSG00000224294
Gene Name: RP3-326I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
719-738
0.020
2
7mer
1762-1788
0.010
0
6mer
1496-1516
0.002
1
XLOC_005034
hsa-miR-214-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010517
Biotype: transcript isomorph
Gene id: XLOC_005034
Gene Name: XLOC_005034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
738-758
0.029
2
6mer
971-989
0.003
0
RP5-890E16.2
hsa-miR-214-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578660
Biotype: retained_intron
Gene id: ENSG00000263412
Gene Name: RP5-890E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
772-789
0.020
4
8mer
2208-2229
0.006
1
6mer
325-348
0.004
2
6mer
322-347
0.002
2
RP11-15H20.6
hsa-miR-214-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598386
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
508-531
0.028
1
7mer
285-311
0.005
Not Conserved
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