LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-15H20.6
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598599
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-537
0.028
1
7mer
186-212
0.005
Not Conserved
LINC00466
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436475
Biotype: lincRNA
Gene id: ENSG00000224209
Gene Name: LINC00466
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
230-256
0.017
11
6mer
200-225
0.013
10
6mer
177-202
0.004
1
LINC00652
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000454749
Biotype: lincRNA
Gene id: ENSG00000179935
Gene Name: LINC00652
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-147
0.021
3
6mer
718-738
0.007
3
6mer
187-210
0.003
1
6mer
369-395
0.003
Not Conserved
LL22NC03-102D1.18
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438185
Biotype: lincRNA
Gene id: ENSG00000223999
Gene Name: LL22NC03-102D1.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-134
0.020
Not Conserved
7mer
257-269
0.011
0
6mer
74-94
0.003
0
UCA1
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397381
Biotype: lincRNA
Gene id: ENSG00000214049
Gene Name: UCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
28-53
0.020
1
6mer
1943-1968
0.013
1
CTD-2291D10.3
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600896
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
362-374
0.033
0
LINC00969
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596584
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-522
0.012
5
8mer
328-354
0.011
0
8mer
477-492
0.005
0
8mer+wobble
365-382
0.003
0
6mer
552-578
0.002
0
CTC-340A15.2
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519267
Biotype: antisense
Gene id: ENSG00000241956
Gene Name: CTC-340A15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-333
0.021
1
7mer
204-222
0.012
2
RP11-381P6.1
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581673
Biotype: antisense
Gene id: ENSG00000264660
Gene Name: RP11-381P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-258
0.022
1
8mer
73-96
0.011
1
XLOC_003431
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007959
Biotype: transcript isomorph
Gene id: XLOC_003431
Gene Name: XLOC_003431
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
527-552
0.022
0
7mer
113-131
0.011
1
RP11-219B17.1
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501579
Biotype: antisense
Gene id: ENSG00000245534
Gene Name: RP11-219B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-588
0.033
1
RP11-774O3.3
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1080-1095
0.012
1
7mer
802-824
0.007
1
8mer
1839-1864
0.004
0
7mer
2099-2123
0.002
0
8mer+wobble
920-941
0.002
0
8mer
1635-1655
0.002
0
7mer
1737-1752
0.001
0
6mer
2142-2158
0.001
Not Conserved
7mer
1686-1701
0.001
Not Conserved
7mer
1788-1803
0.001
Not Conserved
RP11-461O7.1
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565155
Biotype: lincRNA
Gene id: ENSG00000246379
Gene Name: RP11-461O7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-146
0.033
5
LINC-ROR
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000553704
Biotype: lincRNA
Gene id: ENSG00000258609
Gene Name: LINC-ROR
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2023-2029
0.026
1
6mer
478-500
0.006
1
RP11-15H20.6
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598323
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
522-545
0.028
1
7mer
224-250
0.005
Not Conserved
NAMA
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000604258
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1834-1853
0.017
10
9mer
836-845
0.012
2
7mer
1263-1279
0.003
1
6mer
991-1013
0.001
1
RP4-555L14.4
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465549
Biotype: antisense
Gene id: ENSG00000241456
Gene Name: RP4-555L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-432
0.017
0
7mer
122-139
0.012
1
7mer
303-324
0.004
Not Conserved
RP11-297L17.2
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565153
Biotype: lincRNA
Gene id: ENSG00000260963
Gene Name: RP11-297L17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-341
0.022
1
6mer
392-406
0.006
2
7mer
422-436
0.005
0
XLOC_006900
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014830
Biotype: transcript isomorph
Gene id: XLOC_006900
Gene Name: XLOC_006900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-249
0.033
4
CTD-2076M15.1
hsa-miR-214-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561587
Biotype: lincRNA
Gene id: ENSG00000260683
Gene Name: CTD-2076M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
97-111
0.010
0
6mer
1082-1094
0.009
1
6mer
203-218
0.007
0
6mer
1829-1848
0.007
0
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