LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-403I13.7
hsa-miR-214-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424684
Biotype: lincRNA
Gene id: ENSG00000263590
Gene Name: RP11-403I13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-297
0.022
1
7mer
4101-4123
0.007
0
7mer
2242-2257
0.004
1
RP11-126H7.4
hsa-miR-214-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000372387
Biotype: antisense
Gene id: ENSG00000204049
Gene Name: RP11-126H7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1435-1450
0.015
10
7mer
444-467
0.008
1
7mer
974-990
0.005
0
6mer
1445-1462
0.005
8
AC013271.3
hsa-miR-214-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417926
Biotype: lincRNA
Gene id: ENSG00000186148
Gene Name: AC013271.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-591
0.031
1
7mer
1851-1875
0.002
0
AC090505.6
hsa-miR-214-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423318
Biotype: lincRNA
Gene id: ENSG00000237222
Gene Name: AC090505.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3253-3274
0.019
1
8mer
1371-1391
0.007
2
6mer
227-244
0.003
1
6mer
1675-1701
0.002
4
6mer
2772-2791
0.002
1
LINC00702
hsa-miR-214-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608792
Biotype: lincRNA
Gene id: ENSG00000233117
Gene Name: LINC00702
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-57
0.010
Not Conserved
7mer
155-169
0.008
2
7mer
3401-3424
0.004
1
7mer
1451-1456
0.004
1
6mer
5091-5106
0.002
2
7mer
4130-4145
0.002
1
6mer
3781-3799
0.002
1
6mer
3175-3193
0.001
Not Conserved
LINC00661
hsa-miR-214-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000546512
Biotype: lincRNA
Gene id: ENSG00000205396
Gene Name: LINC00661
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
261-281
0.015
1
7mer
436-460
0.012
1
6mer
154-177
0.007
0
RP11-82L18.2
hsa-miR-214-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000456944
Biotype: sense_intronic
Gene id: ENSG00000224945
Gene Name: RP11-82L18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-252
0.018
1
7mer
304-320
0.011
1
6mer
246-270
0.002
1
6mer
266-286
0.002
1
C21orf37
hsa-miR-214-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440664
Biotype: lincRNA
Gene id: ENSG00000232560
Gene Name: C21orf37
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-41
0.033
6
XLOC_006753
hsa-miR-214-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2173-2196
0.005
3
7mer
5498-5517
0.004
9
7mer
229-247
0.004
1
6mer
399-423
0.004
3
6mer
6298-6312
0.003
4
6mer
800-815
0.003
1
8mer
4349-4367
0.003
0
6mer
5918-5937
0.003
4
6mer
4871-4875
0.002
3
7mer
5393-5411
0.001
1
6mer
3692-3700
0.001
2
XLOC_009180
hsa-miR-214-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019149
Biotype: transcript isomorph
Gene id: XLOC_009180
Gene Name: XLOC_009180
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2336-2357
0.012
1
6mer
3012-3034
0.010
1
8mer
1951-1969
0.005
1
6mer
813-821
0.003
1
6mer
2253-2273
0.003
0
LINC00347
hsa-miR-214-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000597518
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
67-74
0.033
1
AC018647.3
hsa-miR-214-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_108082.1
Biotype: lincRNA
Gene id: NR_108082.1 (gene)
Gene Name: AC018647.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-71
0.021
6
6mer
196-209
0.012
7
RP11-214O1.3
hsa-miR-214-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584683
Biotype: lincRNA
Gene id: ENSG00000266378
Gene Name: RP11-214O1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1046-1063
0.024
5
6mer
456-472
0.006
3
6mer
68-89
0.004
1
LOC648987
hsa-miR-214-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-68
0.014
Not Conserved
6mer
2266-2282
0.007
1
6mer
795-816
0.006
1
6mer
1745-1761
0.004
0
6mer
1742-1749
0.002
1
PVT1
hsa-miR-214-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521951
Biotype: lincRNA
Gene id: ENSG00000249859
Gene Name: PVT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1182-1205
0.029
2
8mer
924-933
0.004
1
RP11-23E19.1
hsa-miR-214-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568931
Biotype: antisense
Gene id: ENSG00000259833
Gene Name: RP11-23E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-210
0.020
1
6mer
481-500
0.007
1
7mer
187-214
0.006
1
C21orf15
hsa-miR-214-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026755.1
Biotype: lincRNA
Gene id: NR_026755.1 (gene)
Gene Name: C21orf15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-157
0.014
0
6mer
10-31
0.012
0
6mer
1198-1215
0.008
0
FTX
hsa-miR-214-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430772
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
647-665
0.013
1
9mer
669-686
0.010
2
6mer
644-665
0.005
4
6mer
497-509
0.005
0
CTA-228A9.4
hsa-miR-214-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
19791-19796
0.005
1
7mer
15493-15507
0.003
1
7mer
6907-6929
0.003
Not Conserved
6mer
2734-2760
0.003
7
7mer
13416-13436
0.002
2
6mer
4801-4827
0.002
9
6mer
16897-16922
0.002
3
6mer
1322-1343
0.002
1
6mer
18034-18050
0.002
1
6mer
18233-18238
0.001
1
6mer
11112-11136
0.001
0
6mer
8708-8722
0.001
0
6mer
13974-13988
0.001
0
7mer
4818-4842
0.001
2
6mer
16985-17012
0.001
1
6mer
13460-13485
0.001
1
6mer
8489-8511
0.001
Not Conserved
6mer
7113-7131
0.001
1
6mer
2047-2071
0.001
0
6mer
11169-11194
0.000
2
FAM226A
hsa-miR-214-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026595.2
Biotype: sense
Gene id: NR_026595.2 (gene)
Gene Name: FAM226A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1499-1521
0.023
3
6mer
244-269
0.006
1
6mer
652-676
0.004
2
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