LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009308
hsa-miR-214-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019510
Biotype: transcript isomorph
Gene id: XLOC_009308
Gene Name: XLOC_009308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-108
0.066
1
7mer
445-465
0.006
Not Conserved
NAMA
hsa-miR-214-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000605377
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-456
0.025
1
9mer
349-358
0.022
2
8mer
454-476
0.017
3
7mer
74-91
0.008
1
XLOC_012370
hsa-miR-214-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-208
0.042
0
6mer
72-91
0.016
0
6mer
1741-1765
0.014
0
XLOC_013037
hsa-miR-214-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027513
Biotype: transcript isomorph
Gene id: XLOC_013037
Gene Name: XLOC_013037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-278
0.056
1
6mer
58-81
0.005
1
6mer
512-516
0.004
1
7mer
945-962
0.003
2
6mer
825-850
0.003
4
6mer
989-1006
0.001
5
CTD-2013N24.2
hsa-miR-214-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596732
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-113
0.063
11
7mer
235-259
0.008
1
SCGB1B2P
hsa-miR-214-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595013
Biotype: lincRNA
Gene id: ENSG00000268751
Gene Name: SCGB1B2P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-488
0.019
1
7mer
124-144
0.016
1
8mer
99-123
0.016
0
6mer
121-137
0.011
2
6mer
468-488
0.006
1
6mer
483-496
0.003
0
RP1-71H24.6
hsa-miR-214-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614658
Biotype: lincRNA
Gene id: ENSG00000276343
Gene Name: RP1-71H24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-119
0.055
1
6mer
163-178
0.016
1
RP11-764K9.1
hsa-miR-214-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
705-715
0.026
0
6mer
953-973
0.011
0
6mer
573-597
0.010
0
6mer
650-665
0.009
0
6mer
653-671
0.007
0
6mer
702-715
0.006
0
XLOC_007710
hsa-miR-214-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
705-715
0.027
0
6mer
953-973
0.011
0
6mer
573-597
0.010
0
6mer
650-665
0.009
0
6mer
653-671
0.007
0
6mer
702-715
0.006
0
XLOC_009215
hsa-miR-214-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019389
Biotype: transcript isomorph
Gene id: XLOC_009215
Gene Name: XLOC_009215
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-297
0.070
1
XLOC_013931
hsa-miR-214-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2130-2146
0.029
0
7mer
577-599
0.015
0
6mer
211-236
0.015
0
6mer
1756-1773
0.011
0
CTD-2013N24.2
hsa-miR-214-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598783
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-194
0.061
11
7mer
316-340
0.007
1
XLOC_013305
hsa-miR-214-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026763
Biotype: transcript isomorph
Gene id: XLOC_013305
Gene Name: XLOC_013305
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-143
0.016
1
7mer
470-487
0.016
1
8mer
98-122
0.016
0
6mer
120-136
0.011
2
6mer
467-487
0.006
1
6mer
482-495
0.003
0
LOC100190986
hsa-miR-214-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1442-1459
0.041
0
7mer
504-523
0.017
0
6mer
838-851
0.010
0
XLOC_007861
hsa-miR-214-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016482
Biotype: transcript isomorph
Gene id: XLOC_007861
Gene Name: XLOC_007861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-182
0.067
1
XLOC_013265
hsa-miR-214-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1306-1321
0.066
0
RP11-507B12.1
hsa-miR-214-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559590
Biotype: lincRNA
Gene id: ENSG00000259675
Gene Name: RP11-507B12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-199
0.054
9
6mer
144-157
0.012
9
XLOC_000667
hsa-miR-214-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001367
Biotype: transcript isomorph
Gene id: XLOC_000667
Gene Name: XLOC_000667
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
975-995
0.009
0
7mer
310-330
0.006
0
6mer
170-190
0.005
0
6mer
1115-1125
0.005
0
6mer
135-145
0.005
0
6mer
30-40
0.003
0
6mer
590-600
0.003
0
6mer
835-855
0.003
Not Conserved
6mer
800-810
0.003
0
6mer
100-120
0.003
0
6mer
1080-1090
0.003
0
6mer
205-215
0.003
Not Conserved
6mer
240-260
0.003
0
6mer
415-436
0.002
0
6mer
345-350
0.002
Not Conserved
6mer
65-75
0.002
Not Conserved
6mer
1010-1030
0.002
Not Conserved
6mer
485-495
0.002
Not Conserved
6mer
695-715
0.002
Not Conserved
6mer
380-400
0.001
Not Conserved
CTD-2013N24.2
hsa-miR-214-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601511
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
311-328
0.052
11
6mer
133-156
0.008
11
6mer
134-159
0.006
7
RP11-327I22.5
hsa-miR-214-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000621949
Biotype: lincRNA
Gene id: ENSG00000278849
Gene Name: RP11-327I22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-479
0.065
0
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