LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
C5orf64
hsa-miR-214-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505642
Biotype: lincRNA
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2505-2528
0.006
1
7mer
2523-2538
0.006
0
6mer
989-1009
0.004
6
6mer
2523-2534
0.004
5
6mer
78-101
0.004
1
6mer
2335-2361
0.003
2
6mer
1947-1951
0.003
2
6mer
2507-2531
0.002
1
CTA-280A3.2
hsa-miR-214-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9064-9075
0.009
1
7mer
589-594
0.008
1
7mer
6996-7021
0.005
1
8mer
2637-2649
0.002
1
6mer
5520-5524
0.002
1
6mer
3765-3776
0.002
1
6mer
6161-6182
0.001
1
6mer
1744-1765
0.001
1
6mer
6318-6341
0.001
1
6mer
7504-7522
0.001
1
6mer
4011-4031
0.001
Not Conserved
6mer
7011-7024
0.001
1
6mer
4080-4100
0.000
1
6mer
7512-7531
0.000
1
FTX
hsa-miR-214-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000423992
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-641
0.014
1
9mer
645-662
0.010
2
6mer
620-641
0.005
4
6mer
267-279
0.005
0
XLOC_014197
hsa-miR-214-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029335
Biotype: transcript isomorph
Gene id: XLOC_014197
Gene Name: XLOC_014197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5239-5263
0.025
1
7mer
839-861
0.004
1
7mer
4065-4087
0.003
1
7mer
3443-3464
0.002
0
RP11-354H21.2
hsa-miR-214-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000461186
Biotype: lincRNA
Gene id: ENSG00000240573
Gene Name: RP11-354H21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-370
0.018
0
8mer
509-527
0.015
1
NUTM2B-AS1
hsa-miR-214-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000477192
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-309
0.026
1
7mer
284-309
0.008
0
RP13-1039J1.2
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000483717
Biotype: lincRNA
Gene id: ENSG00000184115
Gene Name: RP13-1039J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-493
0.034
1
AC007750.5
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110255.1
Biotype: antisense
Gene id: NR_110255.1 (gene)
Gene Name: AC007750.5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-675
0.030
1
7mer
371-390
0.003
0
RNASEK-C17orf49
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037717.1
Biotype: sense
Gene id: NR_037717.1 (gene)
Gene Name: RNASEK-C17orf49
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1680-1704
0.010
4
7mer
1277-1291
0.008
8
6mer
1660-1682
0.006
5
6mer
269-287
0.006
9
6mer
1787-1801
0.004
6
NUTM2B-AS1
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000496359
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-420
0.025
1
7mer
404-413
0.008
0
XLOC_010134
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020849
Biotype: transcript isomorph
Gene id: XLOC_010134
Gene Name: XLOC_010134
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-82
0.034
6
RP11-114G22.1
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536744
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-375
0.028
4
6mer
452-467
0.005
4
RAB4B-EGLN2
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037791.1
Biotype: sense
Gene id: NR_037791.1 (gene)
Gene Name: RAB4B-EGLN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2011-2028
0.014
7
7mer
391-414
0.009
7
6mer
2339-2364
0.004
7
6mer
1022-1045
0.003
8
6mer
784-797
0.003
7
AC016747.3
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420918
Biotype: lincRNA
Gene id: ENSG00000212978
Gene Name: AC016747.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2468-2489
0.028
2
6mer
274-294
0.005
0
RP11-37B2.1
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521996
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
689-716
0.025
0
6mer
175-188
0.006
1
7mer
557-582
0.003
1
CTD-2410N18.4
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000520515
Biotype: retained_intron
Gene id: ENSG00000273345
Gene Name: CTD-2410N18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1422-1446
0.034
8
RP11-706J10.2
hsa-miR-214-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000603284
Biotype: lincRNA
Gene id: ENSG00000270866
Gene Name: RP11-706J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
386-405
0.034
10
FAM95B1
hsa-miR-214-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000618309
Biotype: retained_intron
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-87
0.012
Not Conserved
6mer
345-370
0.005
0
6mer
4657-4680
0.004
Not Conserved
7mer
1990-2009
0.004
Not Conserved
6mer
4331-4355
0.003
Not Conserved
6mer
3029-3044
0.001
Not Conserved
6mer
368-389
0.001
Not Conserved
6mer
2726-2747
0.001
Not Conserved
6mer
2806-2825
0.001
Not Conserved
RP11-366F6.2
hsa-miR-214-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000411474
Biotype: antisense
Gene id: ENSG00000229967
Gene Name: RP11-366F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
782-809
0.033
2
FAM95B1
hsa-miR-214-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592873
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-86
0.012
Not Conserved
6mer
344-369
0.005
0
6mer
4656-4679
0.004
Not Conserved
7mer
1989-2008
0.004
Not Conserved
6mer
4330-4354
0.003
Not Conserved
6mer
3028-3043
0.001
Not Conserved
6mer
367-388
0.001
Not Conserved
6mer
2725-2746
0.001
Not Conserved
6mer
2805-2824
0.001
Not Conserved
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