LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
LINC01109
hsa-miR-214-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000603837
Biotype: lincRNA
Gene id: ENSG00000271167
Gene Name: LINC01109
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
326-345
0.035
10
XLOC_008106
hsa-miR-214-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017284
Biotype: transcript isomorph
Gene id: XLOC_008106
Gene Name: XLOC_008106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
462-488
0.013
1
7mer
1036-1059
0.012
0
6mer
845-849
0.009
1
RP11-345P4.9
hsa-miR-214-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607222
Biotype: antisense
Gene id: ENSG00000272106
Gene Name: RP11-345P4.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-376
0.021
1
8mer
510-527
0.010
1
8mer+wobble
675-694
0.002
1
6mer
1983-2007
0.001
Not Conserved
RP11-473M20.9
hsa-miR-214-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577123
Biotype: lincRNA
Gene id: ENSG00000262370
Gene Name: RP11-473M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-222
0.035
0
AC074286.1
hsa-miR-214-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000397057
Biotype: sense_overlapping
Gene id: ENSG00000213963
Gene Name: AC074286.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3388-3409
0.014
Not Conserved
8mer
1239-1252
0.007
0
6mer
5038-5047
0.006
1
6mer
1566-1584
0.002
1
6mer
2668-2683
0.002
0
7mer
2272-2295
0.001
0
7mer
3616-3641
0.001
0
9mer
1512-1533
0.001
1
XLOC_003330
hsa-miR-214-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006710
Biotype: transcript isomorph
Gene id: XLOC_003330
Gene Name: XLOC_003330
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-241
0.035
7
AC009014.3
hsa-miR-214-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607574
Biotype: lincRNA
Gene id: ENSG00000271824
Gene Name: AC009014.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
888-904
0.019
8
7mer
873-890
0.007
7
8mer
382-401
0.006
0
6mer
870-890
0.002
7
CASC7
hsa-miR-214-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
118-138
0.009
8
7mer
7260-7280
0.006
9
6mer
2963-2989
0.004
9
6mer
8194-8218
0.003
1
6mer
2651-2671
0.002
1
7mer
5422-5442
0.002
0
6mer
5699-5724
0.002
5
6mer
4941-4961
0.001
0
7mer
7426-7452
0.001
1
6mer
9039-9051
0.001
0
6mer
6737-6760
0.001
1
6mer
5667-5691
0.000
2
XLOC_007089
hsa-miR-214-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10478-10490
0.005
0
6mer
11283-11300
0.004
Not Conserved
7mer
4206-4218
0.004
0
6mer
9736-9752
0.003
0
7mer
5769-5789
0.003
Not Conserved
6mer
7417-7442
0.002
0
7mer
5078-5099
0.002
Not Conserved
6mer
1762-1779
0.002
0
6mer
500-525
0.002
Not Conserved
7mer
4504-4527
0.002
Not Conserved
7mer
4474-4491
0.002
0
6mer
7372-7387
0.001
0
7mer
4500-4513
0.001
Not Conserved
6mer
4821-4844
0.001
Not Conserved
RP1-37N7.1
hsa-miR-214-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579352
Biotype: antisense
Gene id: ENSG00000264177
Gene Name: RP1-37N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-356
0.011
0
6mer
4762-4783
0.005
1
6mer
90-111
0.004
0
7mer
3276-3300
0.003
0
6mer
488-506
0.002
0
6mer
4424-4450
0.002
0
7mer
1142-1162
0.002
Not Conserved
7mer
1553-1569
0.001
0
7mer
2311-2329
0.001
Not Conserved
6mer
1746-1770
0.001
Not Conserved
6mer
1160-1182
0.001
Not Conserved
7mer
2003-2023
0.001
Not Conserved
7mer
1458-1474
0.001
Not Conserved
6mer
1567-1583
0.001
0
6mer
3786-3811
0.001
0
6mer
3258-3281
0.000
0
LINC00667
hsa-miR-214-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582008
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-152
0.017
6
7mer
114-132
0.007
4
6mer
507-532
0.005
2
6mer
3062-3068
0.003
1
8mer+mismatch
3242-3259
0.002
2
LINC01361
hsa-miR-214-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452834
Biotype: lincRNA
Gene id: ENSG00000236268
Gene Name: LINC01361
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1316-1337
0.032
0
6mer
621-641
0.003
1
AC009410.1
hsa-miR-214-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432481
Biotype: lincRNA
Gene id: ENSG00000232023
Gene Name: AC009410.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-652
0.030
1
6mer
612-630
0.004
1
RP11-482D24.3
hsa-miR-214-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552415
Biotype: antisense
Gene id: ENSG00000257918
Gene Name: RP11-482D24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-232
0.018
3
6mer
551-566
0.009
10
7mer
664-683
0.007
3
AC013271.3
hsa-miR-214-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424535
Biotype: lincRNA
Gene id: ENSG00000186148
Gene Name: AC013271.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-154
0.034
1
RP11-116O18.1
hsa-miR-214-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590535
Biotype: sense_intronic
Gene id: ENSG00000266968
Gene Name: RP11-116O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
982-1003
0.019
3
7mer
603-617
0.015
1
XLOC_012981
hsa-miR-214-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
42-67
0.021
1
6mer
2627-2652
0.013
1
AC018647.3
hsa-miR-214-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449644
Biotype: lincRNA
Gene id: ENSG00000227544
Gene Name: AC018647.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-34
0.021
6
6mer
159-172
0.013
7
CTBP1-AS2
hsa-miR-214-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-37
0.025
0
6mer
1715-1739
0.009
1
AC002386.1
hsa-miR-214-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436714
Biotype: lincRNA
Gene id: ENSG00000230941
Gene Name: AC002386.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-160
0.031
0
6mer
200-210
0.003
1
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