LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-195F19.30
hsa-miR-214-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000564224
Biotype: retained_intron
Gene id: ENSG00000261215
Gene Name: RP11-195F19.30
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
280-303
0.011
1
7mer
493-511
0.011
3
7mer
812-837
0.005
0
7mer
489-505
0.004
0
7mer
1444-1466
0.003
3
6mer
2623-2646
0.002
1
PROSER2-AS1
hsa-miR-214-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445498
Biotype: antisense
Gene id: ENSG00000225778
Gene Name: PROSER2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-385
0.014
0
7mer
452-468
0.009
0
8mer
152-168
0.006
0
6mer
1987-1999
0.003
3
6mer
381-392
0.003
0
AGAP11
hsa-miR-214-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3998-4018
0.008
1
7mer
1161-1182
0.007
1
7mer
22-39
0.006
1
6mer
625-641
0.004
1
7mer
3953-3976
0.004
1
6mer
4005-4021
0.003
2
6mer
804-829
0.002
1
6mer
3397-3413
0.001
0
RP4-781K5.2
hsa-miR-214-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436039
Biotype: antisense
Gene id: ENSG00000228830
Gene Name: RP4-781K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-276
0.035
9
XLOC_012257
hsa-miR-214-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025439
Biotype: transcript isomorph
Gene id: XLOC_012257
Gene Name: XLOC_012257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
415-419
0.020
0
6mer
337-361
0.015
0
RP11-709D24.8
hsa-miR-214-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612995
Biotype: sense_intronic
Gene id: ENSG00000278434
Gene Name: RP11-709D24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
493-515
0.011
1
8mer
308-333
0.010
1
8mer
956-974
0.006
1
6mer
969-987
0.003
1
7mer
933-958
0.003
0
6mer
749-770
0.003
2
MEF2C-AS1
hsa-miR-214-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511876
Biotype: antisense
Gene id: ENSG00000248309
Gene Name: MEF2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-55
0.035
12
LINC01359
hsa-miR-214-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415842
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-336
0.020
2
7mer
917-929
0.012
0
7mer
723-743
0.003
0
AC093323.3
hsa-miR-214-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000307533
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-64
0.016
0
6mer
41-67
0.004
0
6mer
887-911
0.004
1
6mer
1507-1529
0.003
1
6mer
697-714
0.003
0
6mer
1586-1600
0.002
0
6mer
1102-1120
0.002
1
CTD-2587H24.14
hsa-miR-214-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586923
Biotype: retained_intron
Gene id: ENSG00000276570
Gene Name: CTD-2587H24.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-287
0.009
2
6mer
267-286
0.006
7
7mer
751-775
0.005
Not Conserved
7mer
1174-1199
0.005
1
6mer
2554-2572
0.005
3
6mer
956-976
0.002
0
7mer
1392-1417
0.002
1
XLOC_000282
hsa-miR-214-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001017
Biotype: transcript isomorph
Gene id: XLOC_000282
Gene Name: XLOC_000282
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-229
0.030
1
6mer
223-250
0.005
0
PCBP1-AS1
hsa-miR-214-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444320
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-91
0.035
3
AC090505.4
hsa-miR-214-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000422271
Biotype: lincRNA
Gene id: ENSG00000230401
Gene Name: AC090505.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
497-505
0.028
1
7mer
458-475
0.007
1
LINC01007
hsa-miR-214-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434537
Biotype: lincRNA
Gene id: ENSG00000233123
Gene Name: LINC01007
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1851-1872
0.010
Not Conserved
7mer
900-915
0.006
1
7mer
1519-1532
0.005
0
6mer
209-219
0.004
1
6mer
2071-2096
0.004
0
7mer
1058-1076
0.004
0
6mer
1254-1271
0.002
1
LINC00470
hsa-miR-214-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581430
Biotype: lincRNA
Gene id: ENSG00000132204
Gene Name: LINC00470
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-148
0.035
1
XLOC_009207
hsa-miR-214-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019384
Biotype: transcript isomorph
Gene id: XLOC_009207
Gene Name: XLOC_009207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
514-534
0.035
2
AC093323.3
hsa-miR-214-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000444232
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-64
0.016
0
6mer
41-67
0.004
0
6mer
887-911
0.004
1
6mer
1438-1460
0.003
1
6mer
697-714
0.003
0
6mer
1517-1531
0.002
0
6mer
1102-1120
0.002
1
RP11-290L1.3
hsa-miR-214-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552367
Biotype: antisense
Gene id: ENSG00000257453
Gene Name: RP11-290L1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-347
0.006
Not Conserved
6mer
320-340
0.005
7
6mer
312-334
0.005
5
6mer
320-343
0.005
7
6mer
312-337
0.004
5
6mer
339-364
0.003
3
6mer
338-355
0.003
2
6mer
338-358
0.003
2
6mer
338-361
0.003
1
RP11-230F18.5
hsa-miR-214-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000619092
Biotype: sense_intronic
Gene id: ENSG00000276248
Gene Name: RP11-230F18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-276
0.015
0
7mer
271-280
0.009
0
8mer
1159-1178
0.004
0
6mer
88-107
0.004
0
6mer
1995-2019
0.002
0
CTA-292E10.9
hsa-miR-214-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11749-11766
0.016
15
7mer
15275-15292
0.003
1
6mer
4841-4860
0.003
6
6mer
19376-19396
0.002
0
6mer
24342-24356
0.002
1
6mer
1831-1853
0.002
5
6mer
18700-18720
0.002
2
6mer
10620-10641
0.001
2
6mer
14468-14489
0.001
1
6mer
18002-18020
0.001
0
6mer
8418-8443
0.001
0
6mer
18381-18403
0.001
Not Conserved
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