LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_006390
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013751
Biotype: transcript isomorph
Gene id: XLOC_006390
Gene Name: XLOC_006390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4587-4600
0.011
6
7mer
1106-1131
0.006
3
6mer
284-307
0.005
5
6mer
248-267
0.005
5
6mer
124-145
0.004
3
6mer
3913-3930
0.002
2
6mer
1060-1083
0.002
2
6mer
2388-2409
0.001
2
RP4-656G21.1
hsa-miR-214-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422638
Biotype: lincRNA
Gene id: ENSG00000228176
Gene Name: RP4-656G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-133
0.026
4
8mer
244-261
0.010
0
CACNA1C-AS1
hsa-miR-214-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544517
Biotype: antisense
Gene id: ENSG00000246627
Gene Name: CACNA1C-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
714-735
0.019
8
8mer
293-309
0.009
Not Conserved
6mer
321-338
0.003
1
6mer
230-245
0.002
2
6mer
290-309
0.002
2
RP11-97O12.6
hsa-miR-214-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000606927
Biotype: sense_intronic
Gene id: ENSG00000271997
Gene Name: RP11-97O12.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3201-3220
0.019
3
7mer
2221-2244
0.005
Not Conserved
6mer
3699-3719
0.004
1
6mer
1753-1779
0.004
2
6mer
581-595
0.003
2
XLOC_007744
hsa-miR-214-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016365
Biotype: transcript isomorph
Gene id: XLOC_007744
Gene Name: XLOC_007744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-211
0.036
0
RP11-280O1.2
hsa-miR-214-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452283
Biotype: antisense
Gene id: ENSG00000237463
Gene Name: RP11-280O1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
590-615
0.013
2
8mer
410-425
0.010
1
7mer
101-125
0.010
1
6mer
587-595
0.004
2
RP11-705C15.3
hsa-miR-214-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537616
Biotype: sense_intronic
Gene id: ENSG00000257027
Gene Name: RP11-705C15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-155
0.018
1
6mer
641-664
0.007
1
7mer
1607-1631
0.006
0
6mer
1406-1412
0.005
1
LINC00698
hsa-miR-214-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465684
Biotype: lincRNA
Gene id: ENSG00000244342
Gene Name: LINC00698
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-174
0.030
5
6mer
1113-1125
0.003
Not Conserved
6mer
1113-1128
0.002
0
RP13-516M14.1
hsa-miR-214-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000566986
Biotype: lincRNA
Gene id: ENSG00000260563
Gene Name: RP13-516M14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1103-1121
0.023
0
6mer
1153-1178
0.009
0
6mer
415-437
0.004
0
LINC01361
hsa-miR-214-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421931
Biotype: lincRNA
Gene id: ENSG00000236268
Gene Name: LINC01361
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1269-1290
0.033
0
6mer
574-594
0.003
1
XLOC_010754
hsa-miR-214-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022389
Biotype: transcript isomorph
Gene id: XLOC_010754
Gene Name: XLOC_010754
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2797-2823
0.013
1
7mer
1155-1173
0.009
2
7mer
2667-2687
0.008
0
6mer
223-241
0.006
1
RP11-114G22.1
hsa-miR-214-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538317
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-131
0.030
4
6mer
208-223
0.005
4
AC093627.10
hsa-miR-214-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000471299
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
793-816
0.020
1
7mer
351-369
0.016
1
XLOC_009281
hsa-miR-214-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019478
Biotype: transcript isomorph
Gene id: XLOC_009281
Gene Name: XLOC_009281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-48
0.015
3
7mer
216-237
0.015
1
7mer
140-160
0.005
1
MIR7515HG
hsa-miR-214-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592730
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
614-637
0.021
1
7mer
351-376
0.014
1
RP11-440L14.1
hsa-miR-214-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503571
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
319-338
0.014
1
6mer
206-230
0.013
1
7mer
69-88
0.009
0
HIPK1-AS1
hsa-miR-214-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450706
Biotype: antisense
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1692-1713
0.035
3
AC005540.3
hsa-miR-214-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413911
Biotype: antisense
Gene id: ENSG00000235852
Gene Name: AC005540.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
85-105
0.003
1
6mer
115-130
0.003
Not Conserved
6mer
118-144
0.003
Not Conserved
6mer
82-102
0.003
1
6mer
91-111
0.003
0
6mer
97-117
0.003
0
6mer
100-120
0.003
0
6mer
94-114
0.002
0
6mer
109-123
0.002
Not Conserved
6mer
112-130
0.002
Not Conserved
6mer
106-123
0.002
Not Conserved
6mer
88-108
0.002
0
6mer
103-123
0.002
Not Conserved
6mer
79-99
0.002
1
RP11-737O24.2
hsa-miR-214-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584431
Biotype: antisense
Gene id: ENSG00000265907
Gene Name: RP11-737O24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
625-645
0.027
10
7mer
632-649
0.008
1
RP11-677O4.2
hsa-miR-214-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000561598
Biotype: lincRNA
Gene id: ENSG00000260759
Gene Name: RP11-677O4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2460-2486
0.016
1
7mer
3166-3188
0.007
1
6mer
212-235
0.004
Not Conserved
6mer
644-662
0.003
1
6mer
974-983
0.002
0
8mer
3035-3059
0.002
1
7mer
2958-2982
0.002
1
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