LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012784
hsa-miR-214-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2265-2270
0.036
0
RP11-111D3.2
hsa-miR-214-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418652
Biotype: lincRNA
Gene id: ENSG00000236920
Gene Name: RP11-111D3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-729
0.027
5
6mer
739-760
0.010
5
XLOC_009955
hsa-miR-214-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020656
Biotype: transcript isomorph
Gene id: XLOC_009955
Gene Name: XLOC_009955
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1239-1259
0.019
0
6mer
105-125
0.017
1
LINC01039
hsa-miR-214-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437113
Biotype: lincRNA
Gene id: ENSG00000234168
Gene Name: LINC01039
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
389-400
0.014
0
7mer
248-271
0.013
2
7mer
18-44
0.010
1
XLOC_013608
hsa-miR-214-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028263
Biotype: transcript isomorph
Gene id: XLOC_013608
Gene Name: XLOC_013608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-353
0.012
0
7mer
1713-1733
0.009
0
6mer
70-80
0.006
1
7mer
406-433
0.005
0
7mer
2022-2045
0.003
Not Conserved
6mer
1441-1464
0.001
0
LINC00950
hsa-miR-214-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024006.1
Biotype: lincRNA
Gene id: NR_024006.1 (gene)
Gene Name: LINC00950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4809-4831
0.015
6
7mer
3832-3852
0.010
4
7mer
1134-1150
0.006
0
7mer
2302-2318
0.003
0
6mer
3564-3577
0.002
1
6mer
3890-3916
0.001
0
LINC00176
hsa-miR-214-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000463337
Biotype: lincRNA
Gene id: ENSG00000196421
Gene Name: LINC00176
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-162
0.022
10
7mer
842-864
0.008
2
7mer
112-133
0.006
3
RP5-1057I20.2
hsa-miR-214-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550909
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-375
0.031
0
6mer
167-191
0.005
2
CTA-246H3.12
hsa-miR-214-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609330
Biotype: lincRNA
Gene id: ENSG00000272942
Gene Name: CTA-246H3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
108-123
0.019
0
6mer
96-113
0.017
0
RP11-497G19.1
hsa-miR-214-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546835
Biotype: lincRNA
Gene id: ENSG00000257883
Gene Name: RP11-497G19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-811
0.024
3
6mer
661-686
0.007
4
7mer
682-690
0.005
2
MIR7515HG
hsa-miR-214-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591400
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1017-1040
0.022
1
7mer
754-779
0.014
1
RP11-170N16.3
hsa-miR-214-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609680
Biotype: antisense
Gene id: ENSG00000273007
Gene Name: RP11-170N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-123
0.016
1
7mer
1115-1139
0.008
0
6mer
953-957
0.006
4
6mer
193-207
0.006
1
JAZF1-AS1
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000444500
Biotype: antisense
Gene id: ENSG00000234336
Gene Name: JAZF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3610-3615
0.018
2
6mer
308-334
0.005
3
6mer
2168-2185
0.003
7
7mer
554-578
0.003
1
6mer
893-914
0.003
1
6mer
909-933
0.002
1
6mer
1329-1342
0.002
1
XLOC_010191
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020911
Biotype: transcript isomorph
Gene id: XLOC_010191
Gene Name: XLOC_010191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-335
0.020
0
6mer
365-389
0.016
0
RP11-805J14.5
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526174
Biotype: antisense
Gene id: ENSG00000254721
Gene Name: RP11-805J14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-123
0.024
4
7mer
276-295
0.008
1
6mer
779-786
0.004
1
AC022007.5
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000621000
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-291
0.022
0
6mer
274-298
0.014
0
PCBP1-AS1
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000614826
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-265
0.036
3
RP11-227D13.5
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616350
Biotype: lincRNA
Gene id: ENSG00000273925
Gene Name: RP11-227D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-139
0.014
0
6mer
57-78
0.009
3
6mer
242-253
0.007
0
6mer
215-235
0.006
3
STX16-NPEPL1
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_037945.1
Biotype: sense
Gene id: NR_037945.1 (gene)
Gene Name: STX16-NPEPL1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2927-2948
0.015
5
8mer
95-118
0.008
4
8mer
72-93
0.007
2
7mer
3388-3409
0.004
2
6mer
3425-3445
0.002
4
HIPK1-AS1
hsa-miR-214-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427953
Biotype: retained_intron
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
922-943
0.036
3
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