LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_007082
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015002
Biotype: transcript isomorph
Gene id: XLOC_007082
Gene Name: XLOC_007082
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-159
0.037
0
MIR7515HG
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585810
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
489-512
0.022
1
7mer
226-251
0.015
1
RP11-757G1.6
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
359-371
0.017
0
6mer
554-580
0.011
0
7mer
42-58
0.009
Not Conserved
TTC28-AS1
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000433317
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-133
0.009
1
6mer
183-199
0.007
10
6mer
327-348
0.006
9
7mer
2371-2388
0.004
0
6mer
184-207
0.004
8
9mer
1794-1817
0.003
1
9mer
2801-2816
0.002
Not Conserved
6mer
1699-1717
0.001
4
LINC00667
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582363
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-168
0.016
6
7mer
130-148
0.007
4
6mer
523-548
0.005
2
6mer
1085-1111
0.004
2
6mer
1740-1762
0.003
2
6mer
1992-2006
0.002
0
CTBP1-AS2
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514984
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-56
0.037
0
PCBP1-AS1
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415060
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-63
0.037
3
RP11-168K11.3
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-256
0.018
1
8mer
147-164
0.016
Not Conserved
6mer
590-603
0.002
1
MIR7515HG
hsa-miR-214-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592816
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
458-481
0.021
1
7mer
195-220
0.016
1
CTB-131B5.5
hsa-miR-214-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607850
Biotype: retained_intron
Gene id: ENSG00000254363
Gene Name: CTB-131B5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5698-5717
0.018
1
7mer
5644-5668
0.008
2
6mer
5779-5803
0.004
2
6mer
5581-5607
0.003
1
6mer
2494-2517
0.002
0
6mer
4326-4342
0.002
3
6mer
929-946
0.001
0
STEAP3-AS1
hsa-miR-214-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454260
Biotype: antisense
Gene id: ENSG00000229867
Gene Name: STEAP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2026-2047
0.014
1
7mer
823-849
0.011
3
7mer
2601-2623
0.009
1
6mer
2261-2282
0.003
1
RP11-73G16.2
hsa-miR-214-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507949
Biotype: lincRNA
Gene id: ENSG00000248991
Gene Name: RP11-73G16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-485
0.024
1
6mer
127-149
0.004
0
6mer
244-262
0.003
1
6mer
244-259
0.003
1
6mer
234-256
0.003
2
XXbac-BPG13B8.10
hsa-miR-214-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436804
Biotype: lincRNA
Gene id: ENSG00000229274
Gene Name: XXbac-BPG13B8.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-311
0.021
1
7mer
754-759
0.009
0
6mer
41-52
0.005
0
6mer
292-314
0.002
0
RP11-133K1.6
hsa-miR-214-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559030
Biotype: lincRNA
Gene id: ENSG00000259198
Gene Name: RP11-133K1.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-111
0.020
0
7mer
3041-3059
0.010
2
6mer
544-558
0.003
2
6mer
2872-2890
0.002
2
6mer
2804-2824
0.001
1
MIR7515HG
hsa-miR-214-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431336
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
501-524
0.021
1
7mer
238-263
0.015
1
RP11-40A13.1
hsa-miR-214-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584688
Biotype: antisense
Gene id: ENSG00000266535
Gene Name: RP11-40A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-95
0.037
7
RP11-463J7.2
hsa-miR-214-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413356
Biotype: lincRNA
Gene id: ENSG00000231175
Gene Name: RP11-463J7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1934-1956
0.036
1
FZD10-AS1
hsa-miR-214-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505807
Biotype: lincRNA
Gene id: ENSG00000250208
Gene Name: FZD10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-614
0.012
1
8mer
179-197
0.007
Not Conserved
7mer
4612-4636
0.003
1
7mer
3107-3120
0.003
0
7mer
8894-8916
0.002
0
6mer
6930-6956
0.002
1
6mer
1020-1044
0.002
0
6mer
4071-4093
0.001
3
6mer
9616-9629
0.001
0
6mer
1518-1540
0.001
1
7mer
3088-3112
0.001
1
6mer
1692-1705
0.001
0
6mer
4068-4093
0.000
1
NALCN-AS1
hsa-miR-214-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000457843
Biotype: antisense
Gene id: ENSG00000233009
Gene Name: NALCN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-229
0.014
3
6mer
2799-2820
0.005
2
6mer
1580-1603
0.003
11
7mer
1797-1811
0.003
0
7mer
2536-2555
0.003
3
6mer
875-897
0.002
1
6mer
1376-1381
0.002
1
6mer
1580-1606
0.002
9
6mer
2621-2633
0.001
0
RP11-49K4.2
hsa-miR-214-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000543403
Biotype: lincRNA
Gene id: ENSG00000256684
Gene Name: RP11-49K4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-265
0.033
5
6mer
109-134
0.003
0
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