LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
BX322557.10
hsa-miR-214-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000400362
Biotype: lincRNA
Gene id: ENSG00000215447
Gene Name: BX322557.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1188-1213
0.030
0
6mer
1292-1308
0.004
0
6mer
36-63
0.004
1
XLOC_013274
hsa-miR-214-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6636-6659
0.028
1
6mer
1188-1207
0.005
1
6mer
1117-1137
0.003
1
7mer
2916-2942
0.002
Not Conserved
RP4-781K5.5
hsa-miR-214-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441360
Biotype: lincRNA
Gene id: ENSG00000241475
Gene Name: RP4-781K5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
898-921
0.023
1
8mer
841-865
0.014
Not Conserved
XLOC_010593
hsa-miR-214-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021644
Biotype: transcript isomorph
Gene id: XLOC_010593
Gene Name: XLOC_010593
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-610
0.027
0
7mer
689-705
0.006
0
6mer
693-704
0.004
0
RP11-804H8.6
hsa-miR-214-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608605
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1576-1601
0.014
5
6mer
1768-1775
0.007
4
6mer
220-230
0.006
2
6mer
1384-1405
0.005
3
6mer
1260-1264
0.004
2
6mer
1400-1426
0.001
1
XLOC_010712
hsa-miR-214-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022101
Biotype: transcript isomorph
Gene id: XLOC_010712
Gene Name: XLOC_010712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-204
0.033
2
6mer
30-47
0.005
0
XLOC_004600
hsa-miR-214-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010139
Biotype: transcript isomorph
Gene id: XLOC_004600
Gene Name: XLOC_004600
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-102
0.017
0
6mer
125-148
0.006
4
7mer
116-134
0.006
0
7mer
320-337
0.005
1
8mer
273-291
0.004
0
RP11-151A6.4
hsa-miR-214-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000454752
Biotype: sense_intronic
Gene id: ENSG00000224356
Gene Name: RP11-151A6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2270-2286
0.030
3
6mer
2329-2346
0.005
1
6mer
1924-1945
0.002
1
AC009299.2
hsa-miR-214-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609940
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-157
0.031
12
6mer
461-487
0.006
5
XLOC_010945
hsa-miR-214-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022642
Biotype: transcript isomorph
Gene id: XLOC_010945
Gene Name: XLOC_010945
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-94
0.023
1
8mer
822-846
0.007
0
6mer
85-108
0.004
1
6mer
631-647
0.002
0
6mer
959-982
0.001
0
INO80B-WBP1
hsa-miR-214-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037849.1
Biotype: sense
Gene id: NR_037849.1 (gene)
Gene Name: INO80B-WBP1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1540-1565
0.017
0
6mer
715-735
0.008
7
7mer
1282-1307
0.006
8
6mer
1197-1222
0.004
10
6mer
1217-1240
0.003
11
XLOC_006663
hsa-miR-214-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014019
Biotype: transcript isomorph
Gene id: XLOC_006663
Gene Name: XLOC_006663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-536
0.028
2
6mer
580-606
0.003
1
7mer
1730-1752
0.003
1
7mer
2664-2689
0.002
0
6mer
1246-1272
0.001
1
AP000233.2
hsa-miR-214-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000453802
Biotype: lincRNA
Gene id: ENSG00000232512
Gene Name: AP000233.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-519
0.029
1
6mer
15-31
0.004
Not Conserved
6mer
23-28
0.004
Not Conserved
XLOC_011568
hsa-miR-214-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023283
Biotype: transcript isomorph
Gene id: XLOC_011568
Gene Name: XLOC_011568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3201-3220
0.021
3
7mer
2221-2244
0.005
Not Conserved
6mer
3630-3650
0.004
1
6mer
581-595
0.003
2
6mer
1753-1779
0.003
2
CTD-2561J22.5
hsa-miR-214-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1870-1888
0.024
1
6mer
4166-4179
0.010
1
6mer
2658-2682
0.003
1
XLOC_003789
hsa-miR-214-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007413
Biotype: transcript isomorph
Gene id: XLOC_003789
Gene Name: XLOC_003789
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1801-1827
0.015
2
6mer
2577-2603
0.006
2
7mer
2177-2189
0.005
1
6mer
604-612
0.004
3
6mer
2497-2520
0.004
1
6mer
2101-2120
0.003
1
ZNF341-AS1
hsa-miR-214-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439444
Biotype: antisense
Gene id: ENSG00000230753
Gene Name: ZNF341-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-219
0.033
1
7mer
69-86
0.004
1
LINC01529
hsa-miR-214-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000564335
Biotype: lincRNA
Gene id: ENSG00000225872
Gene Name: LINC01529
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-72
0.018
3
6mer
222-247
0.007
4
7mer
71-93
0.005
2
9mer
265-287
0.003
0
6mer
534-544
0.002
Not Conserved
6mer
404-421
0.002
0
FLG-AS1
hsa-miR-214-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000593011
Biotype: antisense
Gene id: ENSG00000237975
Gene Name: FLG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-214
0.034
3
6mer
271-292
0.003
0
RP11-426C22.5
hsa-miR-214-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000620513
Biotype: lincRNA
Gene id: ENSG00000260517
Gene Name: RP11-426C22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
169-186
0.011
1
6mer
135-160
0.010
1
7mer
1608-1625
0.008
0
7mer
1892-1913
0.005
0
6mer
1154-1167
0.002
0
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