LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_007895
hsa-miR-214-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016506
Biotype: transcript isomorph
Gene id: XLOC_007895
Gene Name: XLOC_007895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-76
0.030
1
6mer
9041-9051
0.004
6
7mer
5043-5062
0.002
1
8mer
5553-5571
0.001
0
6mer
4187-4211
0.001
Not Conserved
6mer
3865-3889
0.001
0
6mer
8100-8120
0.000
Not Conserved
XLOC_009944
hsa-miR-214-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020645
Biotype: transcript isomorph
Gene id: XLOC_009944
Gene Name: XLOC_009944
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
589-613
0.022
0
6mer
3512-3516
0.013
6
6mer
44-53
0.004
1
AC010745.2
hsa-miR-214-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420404
Biotype: lincRNA
Gene id: ENSG00000228876
Gene Name: AC010745.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
612-630
0.030
Not Conserved
7mer
212-231
0.008
0
LINC01231
hsa-miR-214-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000452746
Biotype: lincRNA
Gene id: ENSG00000236511
Gene Name: LINC01231
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-235
0.032
6
7mer
15-33
0.006
1
XLOC_008814
hsa-miR-214-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018506
Biotype: transcript isomorph
Gene id: XLOC_008814
Gene Name: XLOC_008814
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-552
0.029
0
LCMT1-AS2
hsa-miR-214-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2101-2118
0.011
1
8mer
3644-3669
0.009
0
8mer
4154-4171
0.008
1
6mer
4183-4196
0.004
1
6mer
1958-1971
0.003
1
6mer
1209-1230
0.003
0
PROX1-AS1
hsa-miR-214-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607258
Biotype: antisense
Gene id: ENSG00000272167
Gene Name: PROX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-242
0.031
9
6mer
1156-1171
0.007
13
XLOC_013043
hsa-miR-214-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026996
Biotype: transcript isomorph
Gene id: XLOC_013043
Gene Name: XLOC_013043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-194
0.031
1
6mer
404-426
0.005
4
6mer
1822-1836
0.002
0
RP11-278A23.1
hsa-miR-214-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000538868
Biotype: lincRNA
Gene id: ENSG00000226180
Gene Name: RP11-278A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2117-2142
0.012
0
7mer
1886-1911
0.008
0
6mer
2425-2437
0.005
1
7mer
2217-2237
0.004
0
7mer
1882-1891
0.002
0
6mer
1601-1605
0.002
0
6mer
634-657
0.002
0
6mer
1598-1614
0.001
0
LINC00639
hsa-miR-214-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554732
Biotype: lincRNA
Gene id: ENSG00000259070
Gene Name: LINC00639
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4278-4293
0.022
1
6mer
430-451
0.004
1
8mer
2577-2598
0.004
0
8mer
2379-2399
0.002
0
8mer
2478-2500
0.002
0
6mer
1663-1679
0.001
1
6mer
1918-1939
0.001
Not Conserved
6mer
1428-1444
0.001
0
6mer
2299-2316
0.000
0
6mer
1660-1679
0.000
1
XLOC_013669
hsa-miR-214-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027881
Biotype: transcript isomorph
Gene id: XLOC_013669
Gene Name: XLOC_013669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-133
0.017
1
8mer
824-840
0.012
3
6mer
1472-1492
0.006
3
6mer
1123-1149
0.002
Not Conserved
6mer
941-964
0.001
1
XLOC_001539
hsa-miR-214-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003744
Biotype: transcript isomorph
Gene id: XLOC_001539
Gene Name: XLOC_001539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-46
0.030
2
6mer
1236-1261
0.008
1
RP11-622C24.2
hsa-miR-214-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617013
Biotype: lincRNA
Gene id: ENSG00000277152
Gene Name: RP11-622C24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6320-6340
0.016
0
8mer
5735-5757
0.005
2
7mer
4002-4029
0.005
3
6mer
4452-4465
0.002
2
6mer
3063-3078
0.002
2
7mer
3551-3578
0.002
1
6mer
3687-3706
0.002
3
6mer
5651-5672
0.002
1
6mer
4938-4962
0.001
3
6mer
5957-5983
0.001
0
RP11-521D12.5
hsa-miR-214-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000474667
Biotype: lincRNA
Gene id: ENSG00000243491
Gene Name: RP11-521D12.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
71-92
0.014
0
8mer
486-504
0.013
1
6mer
87-106
0.005
0
6mer
896-915
0.003
2
6mer
1375-1396
0.003
1
SEPT5-GP1BB
hsa-miR-214-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037612.1
Biotype: sense
Gene id: NR_037612.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
502-515
0.006
11
7mer
3108-3125
0.005
1
7mer
2268-2288
0.005
2
8mer
2613-2630
0.005
4
6mer
2727-2747
0.004
7
7mer
2742-2760
0.003
4
6mer
2742-2756
0.002
3
6mer
2451-2468
0.002
6
6mer
2708-2732
0.002
4
6mer
2694-2717
0.002
3
6mer
2664-2686
0.001
3
6mer
2277-2291
0.001
1
PCBP1-AS1
hsa-miR-214-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000612202
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-249
0.038
3
FLJ33360
hsa-miR-214-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502644
Biotype: lincRNA
Gene id: ENSG00000250490
Gene Name: FLJ33360
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-54
0.020
1
8mer
239-261
0.013
Not Conserved
6mer
25-45
0.004
1
RP11-136K7.1
hsa-miR-214-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510180
Biotype: lincRNA
Gene id: ENSG00000249981
Gene Name: RP11-136K7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-154
0.037
1
RP11-186B7.7
hsa-miR-214-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610459
Biotype: antisense
Gene id: ENSG00000276384
Gene Name: RP11-186B7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-407
0.031
4
7mer
276-288
0.006
1
RP11-218M11.6
hsa-miR-214-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582125
Biotype: antisense
Gene id: ENSG00000266775
Gene Name: RP11-218M11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-523
0.034
1
6mer
454-474
0.003
Not Conserved
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