LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-380D23.1
hsa-miR-214-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503998
Biotype: antisense
Gene id: ENSG00000250511
Gene Name: RP11-380D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1328-1347
0.034
3
6mer
1184-1208
0.005
1
CTD-2526A2.2
hsa-miR-214-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562672
Biotype: lincRNA
Gene id: ENSG00000260369
Gene Name: CTD-2526A2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-297
0.021
1
8mer
701-726
0.017
1
RP11-394G3.2
hsa-miR-214-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447848
Biotype: lincRNA
Gene id: ENSG00000236378
Gene Name: RP11-394G3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-628
0.026
1
7mer
87-100
0.012
1
RP4-742J24.2
hsa-miR-214-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439529
Biotype: antisense
Gene id: ENSG00000236526
Gene Name: RP4-742J24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1683-1704
0.010
11
7mer
1552-1572
0.007
1
6mer
1671-1696
0.006
8
6mer
1655-1676
0.004
6
6mer
1541-1560
0.003
4
6mer
1535-1558
0.003
2
6mer
1538-1560
0.003
3
6mer
956-974
0.002
2
XLOC_013913
hsa-miR-214-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028994
Biotype: transcript isomorph
Gene id: XLOC_013913
Gene Name: XLOC_013913
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-311
0.038
7
TUB-AS1
hsa-miR-214-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000506601
Biotype: sense_intronic
Gene id: ENSG00000248332
Gene Name: TUB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1612-1635
0.027
3
6mer
225-235
0.004
Not Conserved
6mer
1305-1316
0.004
3
7mer
997-1019
0.002
0
7mer
1344-1365
0.001
0
6mer
862-875
0.001
0
RP11-440L14.3
hsa-miR-214-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000568585
Biotype: lincRNA
Gene id: ENSG00000260262
Gene Name: RP11-440L14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-549
0.029
1
6mer
54-73
0.009
0
MIR4313
hsa-miR-214-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
363-367
0.019
1
6mer
1072-1096
0.008
1
7mer
1615-1631
0.006
0
6mer
1213-1235
0.005
0
CTA-929C8.9
hsa-miR-214-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-131
0.008
0
7mer
1091-1106
0.003
0
6mer
10928-10954
0.003
1
8mer
16141-16161
0.002
0
7mer
15470-15496
0.002
0
8mer
15923-15940
0.002
0
6mer
20407-20413
0.002
0
6mer
1244-1269
0.002
1
6mer
19239-19260
0.002
1
8mer
16978-16999
0.002
1
6mer
14875-14899
0.002
0
6mer
10079-10097
0.002
1
6mer
23867-23893
0.001
0
6mer
6069-6084
0.001
1
6mer
17902-17918
0.001
1
6mer
4515-4535
0.001
1
6mer
16022-16043
0.001
0
6mer
17025-17039
0.001
1
6mer
20408-20430
0.001
0
6mer
15488-15499
0.000
0
GCSHP3
hsa-miR-214-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453039
Biotype: antisense
Gene id: ENSG00000231955
Gene Name: GCSHP3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1347-1362
0.031
0
6mer
24-46
0.005
0
6mer
516-521
0.003
1
RP11-104H15.10
hsa-miR-214-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575331
Biotype: processed_transcript
Gene id: ENSG00000272884
Gene Name: RP11-104H15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-256
0.027
8
6mer
4721-4734
0.003
3
6mer
4520-4530
0.002
1
7mer
2805-2822
0.002
1
6mer
1550-1574
0.001
1
6mer
4727-4743
0.001
4
7mer
1602-1624
0.001
1
6mer
775-793
0.001
0
6mer
2884-2909
0.001
3
LINC01091
hsa-miR-214-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514823
Biotype: lincRNA
Gene id: ENSG00000249464
Gene Name: LINC01091
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-78
0.009
1
8mer
5081-5104
0.009
1
9mer
5075-5090
0.008
0
8mer
3758-3768
0.007
0
6mer
5020-5045
0.005
1
XLOC_006973
hsa-miR-214-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014902
Biotype: transcript isomorph
Gene id: XLOC_006973
Gene Name: XLOC_006973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1187-1201
0.016
1
7mer
1170-1194
0.014
1
7mer
719-741
0.008
0
RP11-114G22.1
hsa-miR-214-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000413794
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-296
0.031
4
6mer
373-388
0.008
4
RP5-998H6.2
hsa-miR-214-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000450586
Biotype: lincRNA
Gene id: ENSG00000229957
Gene Name: RP5-998H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-55
0.020
8
7mer
1249-1271
0.011
8
6mer
53-78
0.007
3
MIR31HG
hsa-miR-214-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000304425
Biotype: sense_overlapping
Gene id: ENSG00000171889
Gene Name: MIR31HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-120
0.029
0
6mer
181-206
0.009
4
PCBP1-AS1
hsa-miR-214-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601494
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
717-739
0.038
3
RP11-244H3.1
hsa-miR-214-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417456
Biotype: sense_overlapping
Gene id: ENSG00000241014
Gene Name: RP11-244H3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2506-2522
0.007
4
7mer
2383-2397
0.006
3
7mer
2347-2373
0.005
5
7mer
1114-1136
0.004
1
6mer
3121-3135
0.003
4
7mer
1338-1362
0.003
2
8mer
1017-1040
0.003
1
6mer
2344-2368
0.002
7
6mer
2216-2239
0.001
0
6mer
1035-1053
0.001
1
6mer
2251-2272
0.001
2
6mer
2180-2205
0.001
0
6mer
2183-2205
0.001
0
RP11-13K12.1
hsa-miR-214-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591283
Biotype: lincRNA
Gene id: ENSG00000267506
Gene Name: RP11-13K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
844-867
0.008
2
7mer
4245-4270
0.006
0
7mer
1595-1620
0.005
1
7mer
4351-4376
0.004
0
7mer
3738-3743
0.004
Not Conserved
6mer
4595-4611
0.003
1
6mer
4544-4548
0.003
Not Conserved
6mer
551-572
0.002
0
6mer
1182-1195
0.002
1
6mer
4265-4273
0.001
Not Conserved
RP5-908M14.5
hsa-miR-214-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615180
Biotype: antisense
Gene id: ENSG00000233017
Gene Name: RP5-908M14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
601-627
0.018
1
8mer
89-114
0.015
Not Conserved
6mer
30-57
0.003
Not Conserved
6mer
217-236
0.001
Not Conserved
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